RNA id: AMCG00011903


Basic Information

Item Value
RNA id AMCG00011903
length 1089
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00011903
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6395012 ~ 6403156 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCACCGTCCCCTACCAATGCCCCCTGTCCCCTACAAACTCTGGcctgtgctgtgtttttcagAGCATCTTCAGTAACATGGGGAAGCGCTTCTGGGAGATGGAACCGTCCATGTGGGACACGCTGAACAATGCGGGGCTGAGGGGGCACTATCTCTGCAGTGTGTACGCGGCGCGGCTCATGGTCCCGGCGGGGCGGGGCTTGATGGTGGTGGAGAAGATGGACGCAGAGCTGGACAGTCAGAAGCTGCAAGAGattAGAGATGTATTCTGTACAGGAGAGACACCAGAGTTCAGTGGCAAGTGTATCGTGGAGCTTGcgaaagATAAGAGCCTGATATCTCTGACAGGAAAGGTTCTGATGACCTGTGACCTGTCAAGGCGATATAATATACGAGACGTGGATggttgcAGCATTGTTGACTACACCTCCTTCAGTTATCTCCTGTCCAAGGTGCCCTACCTCTCCTGGCTCTCTTACATCACCCCGTCGTTCCTGCGCATCCCCAAGTGGGTCCTGACGCTTTCGGCCAGCAATGAATCAGCAAATCGCACTCTCTTCCTGGTCTCGGGGCTGTGGCAGCGTCTGATTGGCTCCCTGGGGGAGTGGATAGGAACCGAGCGCGCCCGACGCcgtggagagaggggggaaggcGGGGCCAGCAGGTCACGACTGCGGCTCCTGTCCGACAGGCCGGTGGCGCAGACGCGCAGCTCGTCGGTGTTTTACGGTACGCGGAAGTGTGTGCGCCGCCGCTCAGTGTCCCGGCGGGCTGGGCTGGGGGCGATGGCGCTGTCTGGCTGGGTGTGTGTTGTGACTGGAGCGTCCCGGGGCATCGGGAAGGGAGTGGCCTTGCAGCTGTCTGAGGCCAGAGCCATTGTGTACATCACCGGCCGGCACGAGCAGAGCCTTAGAGAGACCGCCACCGAGGTGGAGGCGAGGGGCGGGACCTGCGTGCCCGTGGTCTGTGATTCGACAAAGGAGGATGACATCAAGCAACTGTTTGAGCGAATCACACGTGAGCAGAGCGGGCGGCTGGACATCCTGGTGAACAACGCGTATGCTGGAGTGCAGGTCTCCATCTGA

Function

GO: NA

KEGG:

id description
K11163 DHRS1; dehydrogenase/reductase SDR family member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167251 lncRNA downstream 20017 6373832 ~ 6374995 (-) False AMCG00011895
TU167150 lncRNA downstream 34132 6356465 ~ 6360880 (-) True G133286
TU167131 lncRNA downstream 47299 6306347 ~ 6347713 (-) True G133277
TU167137 lncRNA downstream 64785 6271187 ~ 6330227 (-) False G133277
TU167115 lncRNA downstream 163165 6231158 ~ 6231847 (-) True AMCG00011882
TU167304 lncRNA upstream 62114 6465270 ~ 6479835 (-) False AMCG00011913
TU167303 lncRNA upstream 75117 6478273 ~ 6479835 (-) False AMCG00011913
TU167315 lncRNA upstream 133467 6536623 ~ 6537760 (-) False AMCG00011913
TU167327 lncRNA upstream 140046 6543202 ~ 6545755 (-) False AMCG00011916
TU167344 lncRNA upstream 212046 6615202 ~ 6617207 (-) False AMCG00011920
AMCG00011900 mRNA downstream 1598 6387524 ~ 6393414 (-) True AMCG00011900
AMCG00011895 mRNA downstream 16540 6372500 ~ 6378472 (-) True AMCG00011895
AMCG00011894 mRNA downstream 72284 6316786 ~ 6322728 (-) True AMCG00011894
AMCG00011878 mRNA downstream 122016 6271202 ~ 6272996 (-) True AMCG00011878
AMCG00011884 mRNA downstream 140172 6252815 ~ 6254840 (-) False AMCG00011884
AMCG00011904 mRNA upstream 27601 6430757 ~ 6435298 (-) True AMCG00011904
AMCG00011901 mRNA upstream 34544 6437700 ~ 6446839 (-) True AMCG00011901
AMCG00011902 mRNA upstream 64933 6468089 ~ 6471733 (-) True AMCG00011902
AMCG00011913 mRNA upstream 76563 6479719 ~ 6501567 (-) False AMCG00011913
AMCG00011915 mRNA upstream 102823 6505979 ~ 6509786 (-) True AMCG00011915
TU167158 other downstream 31284 6361391 ~ 6363728 (-) True G133291
TU167121 other downstream 140317 6251946 ~ 6254695 (-) True AMCG00011884
TU167095 other downstream 167819 6225520 ~ 6227193 (-) False AMCG00011886
TU167038 other downstream 315645 6078370 ~ 6079367 (-) True G133208
TU167012 other downstream 401994 5992414 ~ 5993018 (-) True G133183
TU167311 other upstream 76930 6480086 ~ 6481834 (-) False AMCG00011913
TU167316 other upstream 76930 6480086 ~ 6491966 (-) True AMCG00011913
TU167319 other upstream 127541 6530697 ~ 6548895 (-) True G133393
TU167424 other upstream 259976 6663132 ~ 6740536 (-) True AMCG00011924
TU167457 other upstream 365137 6768293 ~ 6770294 (-) False AMCG00011928

Expression Profile