RNA id: TU167254


Basic Information

Item Value
RNA id TU167254
length 390
RNA type TUCP
GC content 0.63
exon number 3
gene id AMCG00011903
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6395012 ~ 6403156 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCGCCGCCGCTCAGTGTCCCGGCGGGCTGGGCTGGGGGTCCGGTCTGCAGTGTCTCTCCGCCGCTGTGTGTCAGTTCTCAGAGATTCCAGGCGATGGCGCTGTCTGGCTGGGTGTGTGTTGTGACTGGAGCGTCCCGGGGCATCGGGAAGGGAGTGGCCTTGCAGCTGTCTGAGGCCAGAGCCATTGTGTACATCACCGGCCGGCACGAGCAGAGCCTTAGAGAGACCGCCACCGAGGTGGAGGCGAGGGGCGGGACCTGCGTGCCCGTGGTCTGTGATTCGACAAAGGAGGATGACATCAAGCAACTGTTTGAGCGAATCACACGTGAGCAGAGCGGGCGGCTGGACATCCTGGTGAACAACGCGTATGCTGGAGTGCAGGTCTCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167251 lncRNA downstream 20021 6373832 ~ 6374995 (-) False AMCG00011895
TU167150 lncRNA downstream 34136 6356465 ~ 6360880 (-) True G133286
TU167131 lncRNA downstream 47303 6306347 ~ 6347713 (-) True G133277
TU167137 lncRNA downstream 64789 6271187 ~ 6330227 (-) False G133277
TU167115 lncRNA downstream 163169 6231158 ~ 6231847 (-) True AMCG00011882
TU167304 lncRNA upstream 67295 6465270 ~ 6479835 (-) False AMCG00011913
TU167303 lncRNA upstream 80298 6478273 ~ 6479835 (-) False AMCG00011913
TU167315 lncRNA upstream 138648 6536623 ~ 6537760 (-) False AMCG00011913
TU167327 lncRNA upstream 145227 6543202 ~ 6545755 (-) False AMCG00011916
TU167344 lncRNA upstream 217227 6615202 ~ 6617207 (-) False AMCG00011920
AMCG00011900 mRNA downstream 1602 6387524 ~ 6393414 (-) True AMCG00011900
AMCG00011895 mRNA downstream 16544 6372500 ~ 6378472 (-) True AMCG00011895
AMCG00011894 mRNA downstream 72288 6316786 ~ 6322728 (-) True AMCG00011894
AMCG00011878 mRNA downstream 122020 6271202 ~ 6272996 (-) True AMCG00011878
AMCG00011884 mRNA downstream 140176 6252815 ~ 6254840 (-) False AMCG00011884
AMCG00011904 mRNA upstream 32782 6430757 ~ 6435298 (-) True AMCG00011904
AMCG00011901 mRNA upstream 39725 6437700 ~ 6446839 (-) True AMCG00011901
AMCG00011902 mRNA upstream 70114 6468089 ~ 6471733 (-) True AMCG00011902
AMCG00011913 mRNA upstream 81744 6479719 ~ 6501567 (-) False AMCG00011913
AMCG00011915 mRNA upstream 108004 6505979 ~ 6509786 (-) True AMCG00011915
TU167158 other downstream 31288 6361391 ~ 6363728 (-) True G133291
TU167121 other downstream 140321 6251946 ~ 6254695 (-) True AMCG00011884
TU167095 other downstream 167823 6225520 ~ 6227193 (-) False AMCG00011886
TU167038 other downstream 315649 6078370 ~ 6079367 (-) True G133208
TU167012 other downstream 401998 5992414 ~ 5993018 (-) True G133183
TU167262 other upstream 4094 6402069 ~ 6461788 (-) True G133365
TU167311 other upstream 82111 6480086 ~ 6481834 (-) False AMCG00011913
TU167316 other upstream 82111 6480086 ~ 6491966 (-) True AMCG00011913
TU167319 other upstream 132722 6530697 ~ 6548895 (-) True G133393
TU167424 other upstream 265157 6663132 ~ 6740536 (-) True AMCG00011924

Expression Profile