RNA id: AMCG00011906



Basic Information


Item Value
RNA id AMCG00011906
length 624
RNA type mRNA
GC content 0.71
exon number 2
gene id AMCG00011906
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6502809 ~ 6503675 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCGTGGTTCTCTCAGGCAGTGCAGGGAGTGAGTCAGCAGGGCCCCCCAGCTGCCACAACACCCCCAGTCTGGGAGGGTCTGTCCGGCCTGTCCCTGGGGGGGGGCGCGGGTGCAGgcggaggtggaggaggaggaggaggaggaagcagCGGCAACGGGGGCGGGCGTTACTTCAGCATCCCCTTCCCACACCCCCCGGTGCAGCCGCAGCCCCCCCAGGGCGGCCCGGAGCACCTGCCGCCCCTCCCGGGCCCGGAGTACCTGCCCTACACGTCCTTCAGCCGCCCCAGCGCCCCCCCGCGGCTGTCAGACCTGCCCCAGGGCCCCCCGCCCAGCGGCGCGGTGTGGCAGGAGCAGCGCTGCGTTCTGGGCTGGCTTCAGGGCTGGGGGGCGTCGCAGAGGGGCCGCTTCCTGCAGGATCTGCTGAGCAAGGCCGTGCCGGGCAAGGTGCGCGACCGGCCCCCCAGCATCTTCGAGTGCCAGCTGCGGCTGTGGGGTCAGTGGTTCGAGTCGTGGAGCGAGGAGGAGAGGAACGGCTTCCTGCACTGCCTGGAGGAGAGGGAGCCCGCACTCACCAGCGCCTTCTACAGGGAGGTCTCCAACACTGCAGGGAGAGAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167109 lncRNA upstream 155103 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 242441 6258060 ~ 6260368 (+) False AMCG00011876
TU167088 lncRNA upstream 278290 6224306 ~ 6224519 (+) True G133248
TU167040 lncRNA upstream 401790 6084852 ~ 6101019 (+) False AMCG00011873
TU166957 lncRNA upstream 425424 6067574 ~ 6077385 (+) True G133145
TU167234 lncRNA downstream 63184 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 85741 6589416 ~ 6589658 (+) True G133354
TU167247 lncRNA downstream 145035 6648710 ~ 6649165 (+) False AMCG00011917
TU167378 lncRNA downstream 172841 6676516 ~ 6717923 (+) False G133440
TU167379 lncRNA downstream 210683 6714358 ~ 6717923 (+) True G133440
AMCG00011897 mRNA upstream 24604 6473151 ~ 6478205 (+) True AMCG00011897
AMCG00011898 mRNA upstream 42100 6449205 ~ 6460709 (+) True AMCG00011898
AMCG00011899 mRNA upstream 77659 6421133 ~ 6425150 (+) True AMCG00011899
AMCG00011896 mRNA upstream 94279 6406462 ~ 6408530 (+) True AMCG00011896
AMCG00011905 mRNA upstream 98331 6402981 ~ 6404478 (+) True AMCG00011905
AMCG00011908 mRNA downstream 23184 6526859 ~ 6531036 (+) True AMCG00011908
AMCG00011909 mRNA downstream 54512 6558187 ~ 6560662 (+) True AMCG00011909
AMCG00011910 mRNA downstream 58424 6562099 ~ 6563815 (+) True AMCG00011910
AMCG00011907 mRNA downstream 63492 6567167 ~ 6568025 (+) True AMCG00011907
AMCG00011922 mRNA downstream 136047 6639722 ~ 6640333 (+) True AMCG00011922
TU167207 other upstream 13601 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 246127 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 614917 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 614917 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 673277 5828801 ~ 5829532 (+) True G133059
TU167225 other downstream 41713 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 733266 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 1001407 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 1061133 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 1061712 7565387 ~ 7566346 (+) False AMCG00011971

Expression Profile