RNA id: AMCG00011908


Basic Information

Item Value
RNA id AMCG00011908
length 1608
RNA type mRNA
GC content 0.60
exon number 10
gene id AMCG00011908
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6526859 ~ 6531036 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctctcctgacCTCCCCAATCCAAGATGGCGGCGCTCAAAGGCAGGTTAACGGTGGGGACTCTGGCGAAAAGTCTCCTCCGAAACACGAGTAGCAGCCGGGGGGCGGGATCCCCAGGGCGGCCTGACCAGCTCTCACACACCCCGTACTCCATAGCACATGCCTCATGCCTCCACACGACAGGACGAGGGGCAGGTCACCTGACCAGAGCCACGCTGGGGCGACACCACCGCGGACACTTCCTATTGGTCAGTGCCGTGTCCGTCAGGCACAACAGCACGCAGACCCCCGTCGATGCGCTCTCGTCCCCTGCTGCAGACGCCGCCCTCCCCGTCCTCCAGCCGAGCGCGGAGCAGACGCTGGAATCGGCTCCCACCGCGCTGGATGTGCTACAGGGCGCCGGGCCGGAGCTCAGCCTGTCGGAGCTGGGCCTGGGCAGCAGCACCCCTGTGGGTCTGGTACAGAACATCCTGGAGTTCATGCACGTGGACTTCGGCCTGCCGTGGTGGGGCGCTATAGTGGCCGgcacgGTGCTGGCTCGGTGTCTGGTGTTCCCAGTGATCGTGAAGGGGCAGCGCGAGGCCGCCAAGCTCAACAACGTGCTGCCCGAGATGACCAAGCTGACCAACCGCATGAACGACGCCAAGAGGAGCGGGAACCAGTTTGAGTtctctaaGGCGTACTCCGACATGATGATGTTCCAGAAGAAACACGATGTCAACCCCCTCAGAGGGTTCCTGGTGCCCCTGGTGCAGgctccCGTCTTTATCTCGTTCTTCATAGCCCTGAGAAAAATGGCCTACCTCCCAGTTCCCAGCATGCAGAGTGGCGGGCTGTGGTGGTTTAGCGACCTCACCATGGCCGACCCCTTCTATATCCTTCCGCTGGCCGTGACCGTGACTATGCTTGGCGTCGTGGAGctgGGTGCGGAGTCGGGGATCGATAACCCCAATCTCAAAGCAATGAAGACTGTGTTCAGGATCATGCCCCTCGCCATCCTCCCCCTCACCATCTCCTTCCCCACGGCAGTGTTCACGTACTGGCTGACCTCCAACCTGTTCTCCCTGGGTCAGGTGGCCGTTCTCAGGCTGCCCGCTGTCCGGCGTCGTCTGTCCATCCCTGACAGAGTGAAACACCCCCCTTCCGCACTGCCCCCCCAGGATGGATTAATCAAGAGCATGAAGACAGGATGGAAGAATGCGCAGCTGGctcagcagctgcaggagagagaaaggaggatgAAAAACCACCTGGACATAGCGGCCAAGGGCCCCCTCAGGCAGACCTTCACCCACAATCCcctgcagcagcaacagcagcagcttcAGACACAGACTGTGAAACCCAAGACAGGGGCGGAGCCAGAGGGCAAGAAGAAGAGGCCATGGGAAGAGACGATTggctgagagagagggtgtggtggagggagagggaagccCCACccatgtttgtatatatatgtgtatctgGGAGAGGCGTgaacagggacagacagacagtattTCAGACAGAAATACGGTCAGTGAGTGAGAAGCGTTAGTACGTTCGTGTGTGGGGAGTTGTGTATTGGTGTCACTGGCAACAATATTAAACCACATTTGGGTCTGGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K03217 yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167109 lncRNA upstream 179153 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 266491 6258060 ~ 6260368 (+) False AMCG00011876
TU167088 lncRNA upstream 302340 6224306 ~ 6224519 (+) True G133248
TU167040 lncRNA upstream 425840 6084852 ~ 6101019 (+) False AMCG00011873
TU166957 lncRNA upstream 449474 6067574 ~ 6077385 (+) True G133145
TU167234 lncRNA downstream 35823 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 58380 6589416 ~ 6589658 (+) True G133354
TU167247 lncRNA downstream 117674 6648710 ~ 6649165 (+) False AMCG00011917
TU167378 lncRNA downstream 145480 6676516 ~ 6717923 (+) False G133440
TU167379 lncRNA downstream 183322 6714358 ~ 6717923 (+) True G133440
AMCG00011906 mRNA upstream 23184 6502809 ~ 6503675 (+) True AMCG00011906
AMCG00011897 mRNA upstream 48654 6473151 ~ 6478205 (+) True AMCG00011897
AMCG00011898 mRNA upstream 66150 6449205 ~ 6460709 (+) True AMCG00011898
AMCG00011899 mRNA upstream 101709 6421133 ~ 6425150 (+) True AMCG00011899
AMCG00011896 mRNA upstream 118329 6406462 ~ 6408530 (+) True AMCG00011896
AMCG00011909 mRNA downstream 27151 6558187 ~ 6560662 (+) True AMCG00011909
AMCG00011910 mRNA downstream 31063 6562099 ~ 6563815 (+) True AMCG00011910
AMCG00011907 mRNA downstream 36131 6567167 ~ 6568025 (+) True AMCG00011907
AMCG00011922 mRNA downstream 108686 6639722 ~ 6640333 (+) True AMCG00011922
AMCG00011917 mRNA downstream 113840 6644876 ~ 6653731 (+) True AMCG00011917
TU167207 other upstream 37651 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 270177 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 638967 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 638967 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 697327 5828801 ~ 5829532 (+) True G133059
TU167225 other downstream 14352 6545388 ~ 6558485 (+) False AMCG00011909
TU167596 other downstream 705905 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 974046 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 1033772 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 1034351 7565387 ~ 7566346 (+) False AMCG00011971

Expression Profile