RNA id: AMCG00011909


Basic Information

Item Value
RNA id AMCG00011909
length 435
RNA type mRNA
GC content 0.68
exon number 2
gene id AMCG00011909
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6545388 ~ 6560662 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTGTGTGAGGACACCCTGCTGTGTAACTTCCCCAAGTGCCGCGGGAAGCTGAGCGGCTTCGCCTGGGTGACGGCCTGCTCCCACGTGTTCTGCGACCAGCACGGAGCGGGGGAGTTCGGCCGCTCGCCCGCCGTGTGCCCGGCCTGCTCCAACACGCTGTCCGGCAAGCTGGACATCGTGCGCACCGAGCTCAGCCCCTCCGAGGAGTACAAGGCCATGGTGCTGGCCGGGCTGCGGCCCGAGACCGTGCTGGACATCAGCTCCCGGGCGCTGACCTTCTGGACTTACCAGtgCCAGTGTGTCCCTGTACTGTCCAGTCCGGCGGCTCTGTCCCCCGGGTCAGACTCACCGAGCCCCAGCTGTGTCGGGTCTTTGCGGCGCCTCTGCAGCCGCTCCCGCAGCGAGTCCAGCTGCTTCTTGTGCGCCTGA

Function

GO: NA

KEGG:

id description
K10639 CCNB1IP1, HEI10; E3 ubiquitin-protein ligase CCNP1IP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167109 lncRNA upstream 210481 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 297819 6258060 ~ 6260368 (+) False AMCG00011876
TU167088 lncRNA upstream 333668 6224306 ~ 6224519 (+) True G133248
TU167040 lncRNA upstream 457168 6084852 ~ 6101019 (+) False AMCG00011873
TU166957 lncRNA upstream 480802 6067574 ~ 6077385 (+) True G133145
TU167234 lncRNA downstream 6197 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 28754 6589416 ~ 6589658 (+) True G133354
TU167247 lncRNA downstream 88048 6648710 ~ 6649165 (+) False AMCG00011917
TU167378 lncRNA downstream 115854 6676516 ~ 6717923 (+) False G133440
TU167379 lncRNA downstream 153696 6714358 ~ 6717923 (+) True G133440
AMCG00011908 mRNA upstream 27151 6526859 ~ 6531036 (+) True AMCG00011908
AMCG00011906 mRNA upstream 54512 6502809 ~ 6503675 (+) True AMCG00011906
AMCG00011897 mRNA upstream 79982 6473151 ~ 6478205 (+) True AMCG00011897
AMCG00011898 mRNA upstream 97478 6449205 ~ 6460709 (+) True AMCG00011898
AMCG00011899 mRNA upstream 133037 6421133 ~ 6425150 (+) True AMCG00011899
AMCG00011910 mRNA downstream 1437 6562099 ~ 6563815 (+) True AMCG00011910
AMCG00011907 mRNA downstream 6505 6567167 ~ 6568025 (+) True AMCG00011907
AMCG00011922 mRNA downstream 79060 6639722 ~ 6640333 (+) True AMCG00011922
AMCG00011917 mRNA downstream 84214 6644876 ~ 6653731 (+) True AMCG00011917
AMCG00011932 mRNA downstream 141251 6701913 ~ 6706375 (+) True AMCG00011932
TU167207 other upstream 68979 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 301505 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 670295 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 670295 5887005 ~ 5887892 (+) False AMCG00011837
TU166858 other upstream 728655 5828801 ~ 5829532 (+) True G133059
TU167596 other downstream 676279 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 944420 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 1004146 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 1004725 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 1400036 7960698 ~ 7970918 (+) False AMCG00011986

Expression Profile