RNA id: AMCG00011910


Basic Information

Item Value
RNA id AMCG00011910
length 552
RNA type mRNA
GC content 0.68
exon number 5
gene id AMCG00011910
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6562099 ~ 6563815 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTGGTGGACGAGCTCTATCGTTTCCGGGACCACTACTTCGATACGCACGCCGTGGAGGACGCCGGCAGGAAGCAGGGCGACGCCCTGCTGTCGCGCGCCGTCAAGCTGCAGCCGGAGCTGGTGCCGGCCTGGAACTGCCTCGGGGAGCAGTACTGGCGGAAGGGGGACCTGAACGGCGCCAAGACCTGCTTCACCGGAGCCCTGCAGCacTGTAAGAATAAGGAGTCTCTGCGCAGTCTGTCCATGGTGCTGCGGCAGCTGCCTGGGCGGCCCGAGGAGCGGGAGGCCCACGTGGTGAAGAGTCTGGACTGCGCCCGGCAGGCCCTGCAGCTGGACATCACCGACGGCACGTCCTGGTATATCCTGGGGAACGCCTACATCTCTCTGTTCTTCTCGTCGGGTCAGACTCCACAGCTCTCCCAGCAGGCCCTGAGCGCCTACACACAGGcgTACCGCTCCCCCTCGGGCCGGGTTGGCAGCCTGGAGACCCGCAGCATCTCTGGCCTGAGCCTGGGGCCCAACCCCGGGGCGGCCGCGCTGGGCAGAGTG

Function

GO: NA

KEGG:

id description
K24928 TTC5; tetratricopeptide repeat protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167109 lncRNA upstream 214393 6322766 ~ 6347706 (+) True G133264
TU167106 lncRNA upstream 301731 6258060 ~ 6260368 (+) False AMCG00011876
TU167088 lncRNA upstream 337580 6224306 ~ 6224519 (+) True G133248
TU167040 lncRNA upstream 461080 6084852 ~ 6101019 (+) False AMCG00011873
TU166957 lncRNA upstream 484714 6067574 ~ 6077385 (+) True G133145
TU167234 lncRNA downstream 3044 6566859 ~ 6578010 (+) True G133350
TU167240 lncRNA downstream 25601 6589416 ~ 6589658 (+) True G133354
TU167247 lncRNA downstream 84895 6648710 ~ 6649165 (+) False AMCG00011917
TU167378 lncRNA downstream 112701 6676516 ~ 6717923 (+) False G133440
TU167379 lncRNA downstream 150543 6714358 ~ 6717923 (+) True G133440
AMCG00011909 mRNA upstream 1437 6558187 ~ 6560662 (+) True AMCG00011909
AMCG00011908 mRNA upstream 31063 6526859 ~ 6531036 (+) True AMCG00011908
AMCG00011906 mRNA upstream 58424 6502809 ~ 6503675 (+) True AMCG00011906
AMCG00011897 mRNA upstream 83894 6473151 ~ 6478205 (+) True AMCG00011897
AMCG00011898 mRNA upstream 101390 6449205 ~ 6460709 (+) True AMCG00011898
AMCG00011907 mRNA downstream 3352 6567167 ~ 6568025 (+) True AMCG00011907
AMCG00011922 mRNA downstream 75907 6639722 ~ 6640333 (+) True AMCG00011922
AMCG00011917 mRNA downstream 81061 6644876 ~ 6653731 (+) True AMCG00011917
AMCG00011932 mRNA downstream 138098 6701913 ~ 6706375 (+) True AMCG00011932
AMCG00011923 mRNA downstream 211890 6775705 ~ 6780766 (+) True AMCG00011923
TU167225 other upstream 3614 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 72891 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 305417 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 674207 5887005 ~ 5887892 (+) False AMCG00011837
TU166897 other upstream 674207 5887005 ~ 5887892 (+) False AMCG00011837
TU167596 other downstream 673126 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 941267 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 1000993 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 1001572 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 1396883 7960698 ~ 7970918 (+) False AMCG00011986

Expression Profile