RNA id: TU167345


Basic Information

Item Value
RNA id TU167345
length 1317
lncRNA type sense_over
GC content 0.40
exon number 2
gene id AMCG00011920
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6607329 ~ 6631802 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gATGTTCATATGACAGGTCCGACCCTCCACCCCCTACAGAATCTGGGTCAGCTCAGCATCAGCCCAGGCCACTGGTAAGAGTGGACAGAGGTGGGGGGTCCCTAGACACACCTGCACTGTCCTACTGGTAGTAAGAGAGGAATAGTGCTGAAGATGTTCAGTATCTCTAGAGTTTTTTCATGGctgtatgtctgtctctgtcctttAGCTACAGGAAGCCAGTGAGGAGAGCTGTGTCTGTGAAGACTGAGGATCCAGAGGCCAAGCGCTGTGAGAGCAGAGACATTTACACCAACTGAAGATCAGTAGCGACAATGATCCCATTGAAGAGAGCAGGTCCTGTGAAGACTGAGGAGCCAGAGGCCAAGCGGTGTAATAGCAGAGGCAATTTAATTGACTGTGAGTCCAACCAAACTGTCCCTGTAACACATCTGAAGACATCTCAGTTTTAGTCCCAACAccattaattgcttaatttgctTAAAAATCTGTGCAGCCTGACCAAAGGAATGCATGATCGgtgaaaaaaacgaaacaaaaccaataaacatctttaaaatgcaaGCGCACTTGCTCCACCCCCTCACTCTTGTTCATCACTCCCTCTTTCCACTCATTCGCTATGACTGTCTTCCATCTTCAAACAGAATCCCTTTATAGTGCAGTTCTATTGTACAGTACTTTGGTcctaatatctatctatcttagATAAAACAGTGATCAGTCTACTTTCCGATCAACCATCAAGTTTGTCTGATCCTATTGATCCCTATAACACTGGAGAGCTTTTATTTGATATACGTACCATTCATTTAGCAGATAGCAGTGAGAAATTGGTAAACGGGCCAAACTCatgtgtattataatttattttcattcttaagCAAGTCTTTGCAGCTAAATATGAACGCATGCCTAAGTCTTTAGTAGAGGTGGGATAATTCATTGAATATTTGAATGTGGCACCCTGGTTACTCTATGGTTGAAATGACTATGCCACCCTTTAATTATTCCTGGACCAAAGGGAATTccaaatcaataaaatcactttaatgCTTAATTCCTTTCCAACTGAATGGAAGAATAAATGGTGTTTTCTGCCAAATCAATAAGGCAAGGATCTTTATTACAAagtacatataaaacaaataaaatacaatgtttaatagttacaaaatgcattttgacgGCCAATCTATGTAGCAAACGACTCTCCCCAGTAGCAGCCATAGAACAGTCAAATGTTCACTGCTcctataaaaatgaataataataatgctcaaaagaaaacaaaatacaaatacatttaaagtgctT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167327 lncRNA downstream 69447 6543202 ~ 6545755 (-) False AMCG00011916
TU167315 lncRNA downstream 77442 6536623 ~ 6537760 (-) False AMCG00011913
TU167304 lncRNA downstream 135367 6465270 ~ 6479835 (-) False AMCG00011913
TU167303 lncRNA downstream 135367 6478273 ~ 6479835 (-) False AMCG00011913
TU167251 lncRNA downstream 240207 6373832 ~ 6374995 (-) False AMCG00011895
TU167347 lncRNA upstream 21040 6638247 ~ 6638592 (-) True G133417
TU167425 lncRNA upstream 72801 6690008 ~ 6692129 (-) True G133480
TU167493 lncRNA upstream 210775 6827982 ~ 6828221 (-) True G133529
TU167518 lncRNA upstream 239014 6856221 ~ 6856699 (-) True G133547
TU167529 lncRNA upstream 275538 6892745 ~ 6892973 (-) False AMCG00011941
AMCG00011914 mRNA downstream 38870 6574867 ~ 6576332 (-) True AMCG00011914
AMCG00011911 mRNA downstream 63733 6549362 ~ 6551469 (-) True AMCG00011911
AMCG00011916 mRNA downstream 70044 6539961 ~ 6545158 (-) True AMCG00011916
AMCG00011912 mRNA downstream 80175 6532792 ~ 6535027 (-) True AMCG00011912
AMCG00011915 mRNA downstream 105416 6505979 ~ 6509786 (-) True AMCG00011915
AMCG00011918 mRNA upstream 35917 6653124 ~ 6664187 (-) True AMCG00011918
AMCG00011919 mRNA upstream 48748 6665955 ~ 6674419 (-) True AMCG00011919
AMCG00011921 mRNA upstream 57632 6674839 ~ 6676009 (-) True AMCG00011921
AMCG00011926 mRNA upstream 59483 6676690 ~ 6689522 (-) True AMCG00011926
AMCG00011929 mRNA upstream 89901 6707108 ~ 6712306 (-) True AMCG00011929
TU167319 other downstream 66307 6530697 ~ 6548895 (-) True G133393
TU167316 other downstream 123236 6480086 ~ 6491966 (-) True AMCG00011913
TU167311 other downstream 133368 6480086 ~ 6481834 (-) False AMCG00011913
TU167262 other downstream 153414 6402069 ~ 6461788 (-) True G133365
TU167255 other downstream 217227 6395016 ~ 6397975 (-) False AMCG00011903
TU167424 other upstream 45925 6663132 ~ 6740536 (-) True AMCG00011924
TU167457 other upstream 151086 6768293 ~ 6770294 (-) False AMCG00011928
TU167490 other upstream 207057 6824264 ~ 6824588 (-) True G133526
TU167597 other upstream 607500 7224707 ~ 7229712 (-) True AMCG00011957
TU167599 other upstream 607500 7224707 ~ 7239980 (-) False AMCG00011957

Expression Profile