RNA id: AMCG00011924


Basic Information

Item Value
RNA id AMCG00011924
length 824
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00011924
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6663132 ~ 6740536 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGCGGAGTTAAAAAACACGGCGATTGAAAGTCTGTCTTTATTGTCAGCTGTCGtgcttctgtttatttattttattattaagattcATGTTTTGTTGGTCGCCTGTGACACGGAGACAGCCGGCTTTGCAGTGAGGTATTGATCACAGACGGGAGAGatctCGGTGTTCCACGGCTGGAGATTGGACGGAGGTGACCCCTAATGGCGTCTCCAGGGAGCTTGGGTGGTGGGGCGGTGTCGACGAGGGGAGGCGGAGGGGCAGGGGCCAGGAGACTGAAGTGGGCCCTGGAGTTGAGTCTGGGAAGCAGCAGgggTCGTGGGGACAGACAGAGTAACCAGGGCGATGCTCTCTATCCGATCGGGTACTCCGACAAGCCGGTACCTGACACCAGCGTGCAGGAGACGGACAGGAACCTGGTGGAGAAGCGTTGCTGGGACGTGGCCCTGGGCCCCCTGAAGCAGATCCCTATGAACCTGTTCATCATGTACATGTCAGGGAACACCATCTCCATCTTCCCCATCATGATGGTGTGCATGATGGCCTGGAGACCCATACAGGCGCTCATGTCTGTGTCCGCCAccttCAAGTTGCTGGAGAGCTCCAGTCAGCAGTGGCTACAGGGCCTGGTCTACTTCATCGGCAACCTGTTGGGCCTGGCATTGGCTGTCTACAAGTGTCAATCAATGGGACTCCTGCCCACGCActcctctgattggctggcCTTCATAGAACCACCCCAGTGGGTCAACGTGTTTGTGAGTGAGAGTGTTGGTGTGTATCTGCTGCAGGGCAGGAACAGTAGGGGTTGTGTCCATCTGTCC

Function

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167425 lncRNA downstream 42666 6690008 ~ 6692129 (-) True G133480
TU167347 lncRNA downstream 96203 6638247 ~ 6638592 (-) True G133417
TU167344 lncRNA downstream 117588 6615202 ~ 6617207 (-) False AMCG00011920
TU167345 lncRNA downstream 117588 6615202 ~ 6617207 (-) True AMCG00011920
TU167327 lncRNA downstream 189040 6543202 ~ 6545755 (-) False AMCG00011916
TU167493 lncRNA upstream 87467 6827982 ~ 6828221 (-) True G133529
TU167518 lncRNA upstream 115706 6856221 ~ 6856699 (-) True G133547
TU167529 lncRNA upstream 152230 6892745 ~ 6892973 (-) False AMCG00011941
TU167543 lncRNA upstream 229778 6970293 ~ 6970708 (-) True G133571
TU167564 lncRNA upstream 325898 7066413 ~ 7066672 (-) True G133591
AMCG00011925 mRNA downstream 2500 6715922 ~ 6732295 (-) True AMCG00011925
AMCG00011929 mRNA downstream 22489 6707108 ~ 6712306 (-) True AMCG00011929
AMCG00011926 mRNA downstream 45273 6676690 ~ 6689522 (-) True AMCG00011926
AMCG00011921 mRNA downstream 58786 6674839 ~ 6676009 (-) True AMCG00011921
AMCG00011919 mRNA downstream 60376 6665955 ~ 6674419 (-) True AMCG00011919
AMCG00011930 mRNA upstream 863 6741378 ~ 6747286 (-) True AMCG00011930
AMCG00011927 mRNA upstream 9606 6750121 ~ 6760140 (-) True AMCG00011927
AMCG00011928 mRNA upstream 19892 6760407 ~ 6770264 (-) True AMCG00011928
AMCG00011931 mRNA upstream 31985 6772500 ~ 6774582 (-) True AMCG00011931
AMCG00011936 mRNA upstream 41724 6782239 ~ 6783576 (-) True AMCG00011936
TU167319 other downstream 185900 6530697 ~ 6548895 (-) True G133393
TU167316 other downstream 242829 6480086 ~ 6491966 (-) True AMCG00011913
TU167311 other downstream 252961 6480086 ~ 6481834 (-) False AMCG00011913
TU167262 other downstream 273007 6402069 ~ 6461788 (-) True G133365
TU167255 other downstream 336820 6395016 ~ 6397975 (-) False AMCG00011903
TU167457 other upstream 27778 6768293 ~ 6770294 (-) False AMCG00011928
TU167490 other upstream 83749 6824264 ~ 6824588 (-) True G133526
TU167597 other upstream 484192 7224707 ~ 7229712 (-) True AMCG00011957
TU167599 other upstream 484192 7224707 ~ 7239980 (-) False AMCG00011957
TU167722 other upstream 752355 7492870 ~ 7495633 (-) True G133713

Expression Profile