RNA id: TU167457


Basic Information

Item Value
RNA id TU167457
length 1045
RNA type TUCP
GC content 0.63
exon number 4
gene id AMCG00011928
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6760407 ~ 6770294 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACAACTTGCTGTCCCACTCGGTTTCGTTTttcacaacaataacaataacgaCCAGTTCCTCGCCAACCTGCTGCTACACACTGACACATCGCTGCTGCTGATATAGGATTGCTCCCATTTAATCAGAGTCGCTGTGCTGTAGTCCTCAGCGGTGGCAGGTACACTTTGCGCAATTACCGTCGGCGTAACATGGGCACTGTGGAGTAGCGGAAGACCGCAACCGAAAGTCAGATGCAGGAAGCAAGAAATGCGACTTTGAACCGACGGATGATGACTGAGCGGtgacTCGGCCACAGCCCggctctgtgtctgtctgcccgCCCGCCTGCTGTGGCCGCCACTCCACAGCATGCAGCGAGGGAGTGAGGGAGcgagcaggagagagggagcgggagcGAGGGGGCAGTGGGAGGAGGACGGGGGGCTGACGGTGGATGAGTTTGCGTGTCCGGCGGCCGCTCTGGACAGTCTGTCCGCCCTGCAGTCCACCCTGAGGAGAGTGTTCGCGGTGACCCTGAATCTGGAGGGGGTCCCCGGGGGCCCGGGGGTCAGACGGGATGGCGAGGACCTGGCGTGGGTGCAGCTGTCCGGCAGGGAGAGGGATGTGGAGTCGGCCAAGGTGTTCATTAAGGGGCTGCTGTACCAGGAGCTGCAGACAGAGCTGGCCTTCCCTCAGAACCTGCAGTGTGTGTTCTCAGGGGCCCAGGGGCTGTTCATGGACTGCCTGATCAGAAACACCTCCGCACACATagtgTTGGGCTCCCCTGGGTACCTGCTGCTGTCGGGCCTGTCAGAGCCAGTGGTGCAGGCCTACTCCCTGCTCCAGGACCTGGTGGAGAAGTACGAGGGTGCCCGGGTCCGGCCCCCCGAGGGCGGGGTGGTGGCGGCAGGTGAGTCCCAGGCTGCGCGTCGGGCCTTCCGGGACCTGGTGGAGAGACGGGAGGGCCGGCCCTCCATGGACCTGCTGCTGCTCCCGGGAGCCGTCAAGGAAATCCTGCTGGAGCTGGCCAGGGGATTTGGGGAATTTCCGGAACATGGGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167425 lncRNA downstream 76164 6690008 ~ 6692129 (-) True G133480
TU167347 lncRNA downstream 129701 6638247 ~ 6638592 (-) True G133417
TU167344 lncRNA downstream 151086 6615202 ~ 6617207 (-) False AMCG00011920
TU167345 lncRNA downstream 151086 6615202 ~ 6617207 (-) True AMCG00011920
TU167327 lncRNA downstream 222538 6543202 ~ 6545755 (-) False AMCG00011916
TU167493 lncRNA upstream 57688 6827982 ~ 6828221 (-) True G133529
TU167518 lncRNA upstream 85927 6856221 ~ 6856699 (-) True G133547
TU167529 lncRNA upstream 122451 6892745 ~ 6892973 (-) False AMCG00011941
TU167543 lncRNA upstream 199999 6970293 ~ 6970708 (-) True G133571
TU167564 lncRNA upstream 296119 7066413 ~ 7066672 (-) True G133591
AMCG00011927 mRNA downstream 8153 6750121 ~ 6760140 (-) True AMCG00011927
AMCG00011930 mRNA downstream 21007 6741378 ~ 6747286 (-) True AMCG00011930
AMCG00011924 mRNA downstream 27778 6734795 ~ 6740515 (-) False AMCG00011924
AMCG00011925 mRNA downstream 35998 6715922 ~ 6732295 (-) True AMCG00011925
AMCG00011929 mRNA downstream 55987 6707108 ~ 6712306 (-) True AMCG00011929
AMCG00011931 mRNA upstream 2206 6772500 ~ 6774582 (-) True AMCG00011931
AMCG00011936 mRNA upstream 11945 6782239 ~ 6783576 (-) True AMCG00011936
AMCG00011937 mRNA upstream 27113 6797407 ~ 6800869 (-) True AMCG00011937
AMCG00011935 mRNA upstream 74405 6844699 ~ 6847986 (-) True AMCG00011935
AMCG00011934 mRNA upstream 96323 6866617 ~ 6871500 (-) True AMCG00011934
TU167424 other downstream 27757 6663132 ~ 6740536 (-) True AMCG00011924
TU167319 other downstream 219398 6530697 ~ 6548895 (-) True G133393
TU167316 other downstream 276327 6480086 ~ 6491966 (-) True AMCG00011913
TU167311 other downstream 286459 6480086 ~ 6481834 (-) False AMCG00011913
TU167262 other downstream 306505 6402069 ~ 6461788 (-) True G133365
TU167490 other upstream 53970 6824264 ~ 6824588 (-) True G133526
TU167597 other upstream 454413 7224707 ~ 7229712 (-) True AMCG00011957
TU167599 other upstream 454413 7224707 ~ 7239980 (-) False AMCG00011957
TU167722 other upstream 722576 7492870 ~ 7495633 (-) True G133713
TU167719 other upstream 739455 7509749 ~ 7549652 (-) True G133712

Expression Profile