RNA id: AMCG00011934


Basic Information

Item Value
RNA id AMCG00011934
length 1944
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00011934
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6866617 ~ 6871500 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagggagagggagaaggagagagacaagcagaagagagagggagtcaGGTTTTGCAGTTTAttggaataaaacaacaacatctgtcttaataataacaacatgaaCTTCACTGAAGATCTTTTGCCCGTGCTTTAAGTGGGAGTCCCACACGAACTAAGACCGAGGCTGAgatccccctcttctgagtagAGCCTCTGCTCTCTCTTCATCTCTTCAGGGTCTGCAACACTGCCAGTGGCTGAGccttccctccctccatcgTAGCCATGAATCCCTATCCATCCAAGAACCCCCCTGCCTCCGCCTACTTCAACACCACACCATCCAGCTCTGGCCGACCCCTgaccctaaccctgaccctggCTAAGGCCCTGGCACCCATGACCACCGAGGGGCCAGACGATGGTACCATTGTGAGCAACCACACCTCCACGGCCGTGGGCACACTCATCCTGTCGTTGGTCTTCCTGTTGGGCGTGCCGGGCAACTTGTTCGTCATCTGGAGCATCCTGCATCACACCCGCAAGCGCTCGGTCACCTGCCTGCTCATCCTCAACCTGGCCGTGGCCGACGGGGGGCTCATGCTGCTCACCATCTTCTTCGTGGTCTACCTGGCGATGCAGAGCTGGGTGTTCGGCAACGCCATGTGCAAGATCCTCTTCTACCTGTGCTGCATCAACATGTATGCCAGCATCTTCCTCATCACGCTGATGAGCCTGCACAGGATGCTGATGGTGCTGTGGCCACAGTGGGCCCCCAGGCTCACCCGCAAGGCCGTGGTGACCCGGGTGCTGGTGTGCCTGTGGGCCCTGACGCTGGCCATCTCCAGCCCCGCCCTCATCTACCGCAGGGAGAGGGAGCCGGAGGACATGAAGGGCCGACACCGGCTGATCTGCGATGCCAACCACAACACCACATCCCAGCTGGTGTTCCAGTACACGTTCGAGACCACGCTGGGATTCGTGGCCCCATACTCGCTGATCCTGGTGAGCTACTGCCTCATCCTGCGGCGCCTGAGGAACACCAAATTCCGGCGGCCCATGCGCAGCGAACATCTCATCCTCGCCATTGTCATCACCTTTGGCCTGTTCTGGCTGCCCTACCACGTCGTCAACATGATCCAGGTGGCGGCACATCTGTCCCCACCTCACCAGAAGACGTGGCTTGACCATGTGTGGAAAAGCAGCCGGGCGGTGACCTCGGCGCTGGCCTTCATCAGCTCCTGTGCCAACCCGGTGCTGTACACGCTGGCGGGGCGGGGATACATTCGCAAGGCTGGGATGGGCTTCATGGCACGGCTGTTCGAGGGCACGGCGCCCGACTCAGGGGGGGGCACCCGACGCACACGGAAGGGACACTCCCTGAGCCGCCAGGGCAGCCGGGACAAGGTGGGACTAGAGTCTCTGAGGGACAGGGAGGACAGCACTGACACGTCCACCAAGTCCAACTCTGAGaaatagagaggagagaggagagtggAGCAAGCaaagaggggaggagagggaagagagagaggagaggagtgaGGGGTGCAGAATAGTGGACTCTTGAGGAGAGGGTTgagggttcaatcccaggtgagggacactgctgtaaaacactgtacctagattgctccagtaaaaacccagcaattttaagtcactctggatataTGGAGGGGGCAGCAGGTGAAAATGCctatctgtgtctctctccctctctacatCTAGTTGTAACAAAACCATTACTTCATTTGGGATTTTCAAAGCGTCAGCTATGCCCATTTAtacacagttaaaaaaacagaccTAATGCACAAATACACGCTAATACATGCATGTCTCCACTAGGGGGAGACAAAGGCTAATCTCAGCAGAATCTCGTTGAATGTAATCAGATTAGACAGAGGGAAAGAGGAATTTGTGTGATATTGTAACATGTTGTAAATAAAAGGTTGTTTG

Function

GO: NA

KEGG:

id description
K04297 LTB4R2; leukotriene B4 receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167518 lncRNA downstream 9918 6856221 ~ 6856699 (-) True G133547
TU167493 lncRNA downstream 38396 6827982 ~ 6828221 (-) True G133529
TU167425 lncRNA downstream 174488 6690008 ~ 6692129 (-) True G133480
TU167347 lncRNA downstream 228025 6638247 ~ 6638592 (-) True G133417
TU167344 lncRNA downstream 249410 6615202 ~ 6617207 (-) False AMCG00011920
TU167529 lncRNA upstream 21245 6892745 ~ 6892973 (-) False AMCG00011941
TU167543 lncRNA upstream 98793 6970293 ~ 6970708 (-) True G133571
TU167564 lncRNA upstream 194913 7066413 ~ 7066672 (-) True G133591
TU167584 lncRNA upstream 264368 7135868 ~ 7137524 (-) True G133607
TU167600 lncRNA upstream 353207 7224707 ~ 7240360 (-) False AMCG00011957
AMCG00011935 mRNA downstream 18631 6844699 ~ 6847986 (-) True AMCG00011935
AMCG00011937 mRNA downstream 65748 6797407 ~ 6800869 (-) True AMCG00011937
AMCG00011936 mRNA downstream 83041 6782239 ~ 6783576 (-) True AMCG00011936
AMCG00011931 mRNA downstream 92035 6772500 ~ 6774582 (-) True AMCG00011931
AMCG00011928 mRNA downstream 96353 6760407 ~ 6770264 (-) True AMCG00011928
AMCG00011941 mRNA upstream 21159 6892659 ~ 6897827 (-) True AMCG00011941
AMCG00011942 mRNA upstream 48422 6919922 ~ 6920853 (-) True AMCG00011942
AMCG00011940 mRNA upstream 76255 6947755 ~ 6948753 (-) True AMCG00011940
AMCG00011943 mRNA upstream 92401 6963901 ~ 6964727 (-) True AMCG00011943
AMCG00011945 mRNA upstream 127708 6999208 ~ 7016329 (-) True AMCG00011945
TU167490 other downstream 42029 6824264 ~ 6824588 (-) True G133526
TU167457 other downstream 96323 6768293 ~ 6770294 (-) False AMCG00011928
TU167424 other downstream 126081 6663132 ~ 6740536 (-) True AMCG00011924
TU167319 other downstream 317722 6530697 ~ 6548895 (-) True G133393
TU167316 other downstream 374651 6480086 ~ 6491966 (-) True AMCG00011913
TU167597 other upstream 353207 7224707 ~ 7229712 (-) True AMCG00011957
TU167599 other upstream 353207 7224707 ~ 7239980 (-) False AMCG00011957
TU167722 other upstream 621370 7492870 ~ 7495633 (-) True G133713
TU167719 other upstream 638249 7509749 ~ 7549652 (-) True G133712
TU167720 other upstream 638249 7509749 ~ 7549652 (-) False G133712

Expression Profile