RNA id: AMCG00011937


Basic Information

Item Value
RNA id AMCG00011937
length 1125
RNA type mRNA
GC content 0.59
exon number 5
gene id AMCG00011937
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6797407 ~ 6800869 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGAGTCTATGAAGCCAGAGGACCCCCTGGAGGGTGAGCTGACCTGCCCGGTGTGTCTGGACATCTTCAGGGACCCCTGCCTGCTGCCCTGCGGACACAACTTGTGCCTGCACTGTgtggaggagctgaagaagCAGTCTGTAGGAAGTGGGGAGCGACTGAGCTGCCCTGAGTGCAGGAAGGAGCACGGGCAGGAGGCACAGCTGCAGAAGAACTACAGGCTGGCCAACATCGCCGACGAGTTCAGGAGGAGCCAGAGGGCCGAGACTGTGGAGGCGGTGGTGTCCTGTGACTGGTGTCCAGAGCAGACGGCCGCAGTGAAGACCTGTCTGAAGTGTGAGGTGTCCATGTGTGCGGTCCACCTGAAGCTGCACCAGGAGAAGCCGGCTTTCAGACACCACCCCCTCTCTGAGCCCCTGCGGGACATCGGGCAGAGAAAGTGCCCAGAGCACGATGAGATGTACAAGTACTACTGCGCTGAGGAGAAGGTGTTCGCCTGCACTGACTGCACAGTGGAAGGGAAGCACACTGGACACACCGTGAAATCCCTGAAGAACATGGAGAAGGAGCTCAAGGCCTGCCTGGAATCCAGACTGCAGAGAGCTGAGGAGAAGCTGCAGGAGACTCAGGAGGTCCTGAAGAAGCACAAGACCAATGAGAATAACATTGGCAGCTCAGCTGACCAGTTGGCTGAGCGTCTCCACAGAGCCGTGGACAGGCTGGTGtcccagctgagagagagacaccagcAGGAGACACAGCGCACTGCCAGTCAGCTGCAGCTCAACCACAGCAGGATAGTGGAGCAGCTGAGCCACACTGAGGGCATCAGGAGAGACGTCCAGACTCTGCTGCAGGAGGGAGACCCGTTCCGCCTCATTCAGAGAGACAGGCAGCGCCACCGCACACAGAGCCCAGAGAGACGGGCAGCGCtGATCTGCAGAGCCCTGGAGGCCCCTGTGTGCGACCCTGAGCCTGTCAGCCTGGACAGGAAGAAGCTGCTGGAGAACCTGGAGAACAAATACAGGGATTTCCAGGCAGAGACAGAGGAGTTTCTAATGGTCCTGAGGAGCCAGAACTGTGAGTATCTGCTGTTCACTGCAGCACTGCGGTCACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167425 lncRNA downstream 105278 6690008 ~ 6692129 (-) True G133480
TU167347 lncRNA downstream 158815 6638247 ~ 6638592 (-) True G133417
TU167344 lncRNA downstream 180200 6615202 ~ 6617207 (-) False AMCG00011920
TU167345 lncRNA downstream 180200 6615202 ~ 6617207 (-) True AMCG00011920
TU167327 lncRNA downstream 251652 6543202 ~ 6545755 (-) False AMCG00011916
TU167493 lncRNA upstream 27113 6827982 ~ 6828221 (-) True G133529
TU167518 lncRNA upstream 55352 6856221 ~ 6856699 (-) True G133547
TU167529 lncRNA upstream 91876 6892745 ~ 6892973 (-) False AMCG00011941
TU167543 lncRNA upstream 169424 6970293 ~ 6970708 (-) True G133571
TU167564 lncRNA upstream 265544 7066413 ~ 7066672 (-) True G133591
AMCG00011936 mRNA downstream 13831 6782239 ~ 6783576 (-) True AMCG00011936
AMCG00011931 mRNA downstream 22825 6772500 ~ 6774582 (-) True AMCG00011931
AMCG00011928 mRNA downstream 27143 6760407 ~ 6770264 (-) True AMCG00011928
AMCG00011927 mRNA downstream 37267 6750121 ~ 6760140 (-) True AMCG00011927
AMCG00011930 mRNA downstream 50121 6741378 ~ 6747286 (-) True AMCG00011930
AMCG00011935 mRNA upstream 43830 6844699 ~ 6847986 (-) True AMCG00011935
AMCG00011934 mRNA upstream 65748 6866617 ~ 6871500 (-) True AMCG00011934
AMCG00011941 mRNA upstream 91790 6892659 ~ 6897827 (-) True AMCG00011941
AMCG00011942 mRNA upstream 119053 6919922 ~ 6920853 (-) True AMCG00011942
AMCG00011940 mRNA upstream 146886 6947755 ~ 6948753 (-) True AMCG00011940
TU167457 other downstream 27113 6768293 ~ 6770294 (-) False AMCG00011928
TU167424 other downstream 56871 6663132 ~ 6740536 (-) True AMCG00011924
TU167319 other downstream 248512 6530697 ~ 6548895 (-) True G133393
TU167316 other downstream 305441 6480086 ~ 6491966 (-) True AMCG00011913
TU167311 other downstream 315573 6480086 ~ 6481834 (-) False AMCG00011913
TU167490 other upstream 23395 6824264 ~ 6824588 (-) True G133526
TU167597 other upstream 423838 7224707 ~ 7229712 (-) True AMCG00011957
TU167599 other upstream 423838 7224707 ~ 7239980 (-) False AMCG00011957
TU167722 other upstream 692001 7492870 ~ 7495633 (-) True G133713
TU167719 other upstream 708880 7509749 ~ 7549652 (-) True G133712

Expression Profile