RNA id: AMCG00011940


Basic Information

Item Value
RNA id AMCG00011940
length 747
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00011940
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6947755 ~ 6948753 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAACTCACACAACTATACAGGATTCATGAACAGCTCAAACACCACTGAACATTATACCACTGAAAATGACACAGACTATTCCCATCactgtaatatatacaatatattatggAACAATGAATATGTAATTGACATTTCTATCTTAGTCATCGGGTTTCCCATCATCTGCCTGGCCATCTACAGCCTGTACCAGCTAATCAGGGCCGACATGGTGGTGCCCATCTACATCATCAACCTGCTCAACTCCGACCTCCTGCAGATCATCGCGAGACCAGCCCGTATAGAATATAGTGTTTATAATCTTATATATGATATTCTACTTTCTatcctcttcctcctgccatTTCCCCTTCTTGTGTTCTTCTTTGTCGGCACATGGAGAGCCATCGCCGACGCCACCTCTGTACGACACGCAGAGAAGAGGAGGATTCTGCGTGTGCTGGCCCTCGTTCTGGGCACCTACACTGTACTCTTCCTCCCATTCTGCATAGTGTACTTAATGTACTGGTATTCAGAATATAAGCCTTACATTGCCTATAAAATCACATCTAAAATTGTTTATCTCAGTGCCCTTGTGGACCCAGTGCTGTACATCTTCATCAGGCCTGATGTCAGGAACACACTGGGCTCTCTCCCCTGCTGTCAGAGGCTGTTCACACTgaccaactgctggacacctaGAGATGAGCAGGAGGAGACAGAATATACAGCCACTGTGTCATCTACTGTCACCAGTGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167529 lncRNA downstream 54782 6892745 ~ 6892973 (-) False AMCG00011941
TU167518 lncRNA downstream 91056 6856221 ~ 6856699 (-) True G133547
TU167493 lncRNA downstream 119534 6827982 ~ 6828221 (-) True G133529
TU167425 lncRNA downstream 255626 6690008 ~ 6692129 (-) True G133480
TU167347 lncRNA downstream 309163 6638247 ~ 6638592 (-) True G133417
TU167543 lncRNA upstream 21540 6970293 ~ 6970708 (-) True G133571
TU167564 lncRNA upstream 117660 7066413 ~ 7066672 (-) True G133591
TU167584 lncRNA upstream 187115 7135868 ~ 7137524 (-) True G133607
TU167600 lncRNA upstream 275954 7224707 ~ 7240360 (-) False AMCG00011957
TU167710 lncRNA upstream 537916 7486669 ~ 7549652 (-) False G133712
AMCG00011942 mRNA downstream 26902 6919922 ~ 6920853 (-) True AMCG00011942
AMCG00011941 mRNA downstream 49928 6892659 ~ 6897827 (-) True AMCG00011941
AMCG00011934 mRNA downstream 76255 6866617 ~ 6871500 (-) True AMCG00011934
AMCG00011935 mRNA downstream 99769 6844699 ~ 6847986 (-) True AMCG00011935
AMCG00011937 mRNA downstream 146886 6797407 ~ 6800869 (-) True AMCG00011937
AMCG00011943 mRNA upstream 15148 6963901 ~ 6964727 (-) True AMCG00011943
AMCG00011945 mRNA upstream 50455 6999208 ~ 7016329 (-) True AMCG00011945
AMCG00011944 mRNA upstream 70149 7018902 ~ 7019816 (-) True AMCG00011944
AMCG00011953 mRNA upstream 105608 7054361 ~ 7057516 (-) True AMCG00011953
AMCG00011951 mRNA upstream 127987 7076740 ~ 7077472 (-) True AMCG00011951
TU167490 other downstream 123167 6824264 ~ 6824588 (-) True G133526
TU167457 other downstream 177461 6768293 ~ 6770294 (-) False AMCG00011928
TU167424 other downstream 207219 6663132 ~ 6740536 (-) True AMCG00011924
TU167319 other downstream 398860 6530697 ~ 6548895 (-) True G133393
TU167316 other downstream 455789 6480086 ~ 6491966 (-) True AMCG00011913
TU167597 other upstream 275954 7224707 ~ 7229712 (-) True AMCG00011957
TU167599 other upstream 275954 7224707 ~ 7239980 (-) False AMCG00011957
TU167722 other upstream 544117 7492870 ~ 7495633 (-) True G133713
TU167719 other upstream 560996 7509749 ~ 7549652 (-) True G133712
TU167720 other upstream 560996 7509749 ~ 7549652 (-) False G133712

Expression Profile