RNA id: AMCG00011945


Basic Information

Item Value
RNA id AMCG00011945
length 861
RNA type mRNA
GC content 0.54
exon number 5
gene id AMCG00011945
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 6999208 ~ 7016329 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCACTTCAACAGCACTGATGAGACCTTCATGTATTCTTCAGGCACCATTCAGAATAACACCATGAACTCTACAGACATCCTTGAAAATTCTGACATGTATGATCCTATGATAAcctttataattgtatttaacattttcattgtgtgtCTTGGGCTGCCTTTGAACTGCCTGGCCATCTGTGGCCTGTCCCGCCTGATCAGGTCCAACAAGGTGGTGCCCATCTACATCATCAACCTGCTCATCGCCGACCTCCTGCAGGTCATTTCAAAGCCTCTGTACATTGACTTATATTTTATGGAACTATTCAGCAATGATGAATTGGGAATAGTTAATGTAATTTCTGAACTGCTGTTATTTTCAGGACTGAGTGCCAGCGTGTGGTTCATGCTGTGCATTGCCCTGGAGAGATACCTGGTGGTCGCCCATCCTCTGTGGTACCGTCATGGCCCACGAGCCACCCTGTTCCAGCGCTGCCTGCAGAGACAGAGGCCTGTGGAGTCGATCAGGGAGACTCAGGCTCTGAGCAGCAGGGAGTCGGGCCGGcccagaAGAGTGGCCTGTGGAGTCGATCAGGGAGACTCAGGCTCTGAGCAGCAGGGAGTCAGGCCGGCccagagtgtgagagagaggctggTAGTCCAAGACACAAGGGAGCACATCCACTCCAACAGTGCTTCCATCCGCACTACACATCACCAGGGCTTCCTCGCCGCTGTACTGTCCATCGAGGCCCAACCCCCCGTATCTCCCTGCCCCTGGCTGGACCTGCCCTATCTCTGCTCCTTCCCTTCCCCCTGTCAGAGCACCTCCCCCAGACCCTACCCAGCAGGCAGCCccatctcctcctctccccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167543 lncRNA downstream 28500 6970293 ~ 6970708 (-) True G133571
TU167529 lncRNA downstream 106235 6892745 ~ 6892973 (-) False AMCG00011941
TU167518 lncRNA downstream 142509 6856221 ~ 6856699 (-) True G133547
TU167493 lncRNA downstream 170987 6827982 ~ 6828221 (-) True G133529
TU167425 lncRNA downstream 307079 6690008 ~ 6692129 (-) True G133480
TU167564 lncRNA upstream 50084 7066413 ~ 7066672 (-) True G133591
TU167584 lncRNA upstream 119539 7135868 ~ 7137524 (-) True G133607
TU167600 lncRNA upstream 208378 7224707 ~ 7240360 (-) False AMCG00011957
TU167710 lncRNA upstream 470340 7486669 ~ 7549652 (-) False G133712
TU167723 lncRNA upstream 476541 7492870 ~ 7500924 (-) False G133713
AMCG00011943 mRNA downstream 34481 6963901 ~ 6964727 (-) True AMCG00011943
AMCG00011940 mRNA downstream 50455 6947755 ~ 6948753 (-) True AMCG00011940
AMCG00011942 mRNA downstream 78355 6919922 ~ 6920853 (-) True AMCG00011942
AMCG00011941 mRNA downstream 101381 6892659 ~ 6897827 (-) True AMCG00011941
AMCG00011934 mRNA downstream 127708 6866617 ~ 6871500 (-) True AMCG00011934
AMCG00011944 mRNA upstream 2573 7018902 ~ 7019816 (-) True AMCG00011944
AMCG00011953 mRNA upstream 38032 7054361 ~ 7057516 (-) True AMCG00011953
AMCG00011951 mRNA upstream 60411 7076740 ~ 7077472 (-) True AMCG00011951
AMCG00011950 mRNA upstream 96177 7112506 ~ 7122013 (-) True AMCG00011950
AMCG00011952 mRNA upstream 115534 7131863 ~ 7135207 (-) True AMCG00011952
TU167490 other downstream 174620 6824264 ~ 6824588 (-) True G133526
TU167457 other downstream 228914 6768293 ~ 6770294 (-) False AMCG00011928
TU167424 other downstream 258672 6663132 ~ 6740536 (-) True AMCG00011924
TU167319 other downstream 450313 6530697 ~ 6548895 (-) True G133393
TU167316 other downstream 507242 6480086 ~ 6491966 (-) True AMCG00011913
TU167597 other upstream 208378 7224707 ~ 7229712 (-) True AMCG00011957
TU167599 other upstream 208378 7224707 ~ 7239980 (-) False AMCG00011957
TU167722 other upstream 476541 7492870 ~ 7495633 (-) True G133713
TU167719 other upstream 493420 7509749 ~ 7549652 (-) True G133712
TU167720 other upstream 493420 7509749 ~ 7549652 (-) False G133712

Expression Profile