RNA id: AMCG00011955



Basic Information


Item Value
RNA id AMCG00011955
length 924
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00011955
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7171481 ~ 7176162 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAACGATGCGGCTCAATGGCTGACACTTTGCACGGCGCTGTCTTCTGCAACATACGGAGCCCAACAGGCTGCTATTCGTCTCCTCTCTCTGAACCTCAGCCACAACAGACTCTACAAACTGGACGAAGTCTCTGAGCTGGTGAGAAAAGTGACCAACCTGAAGGTCCTCAACCTCTCTCACAACGAGCTGAAGTCAGAGAGGGTTCTGGACAAGGTGAAGGGCTTCAAGCTGGAGGAGCTGTGGCTGGAGTACAACCCCCTACTGGTTACATTTGAGACTGATCCCCCAACCAAACTCTCGGCCTGCAAGggCAGTACTTCTGTGGGTAGGAAGGTGAAAAGAGTGATTCAGCGCTTCCTGCAGGATGTGTTAatgcatctgtctgtctgtctgtctgtctgtctgtcagCCTCGTGGTTCCACCTGCAGAAGCAAACACGCCAGGGCGTGGTGGCCCTGCTGAGCGAGCTGCCCAAGACGCAGCACGACCCCAGCTCCTTCGTGGTGGACGTCCACACCAGCACTaaaAAGATAGTGTCCTTCACCGTCACTGGAGTGTTTAAAGAAGtgaaCGAGAAGTCTGGAGACTCAGTGCGCATGTTCTCGCGCACGTTCATCACAATCCCTGCAGCAAACTCTGGGCTCTGTATTGTGAACGATGAGCTGTTTGTGCAGAATGCGAAGCCGGAGATGATCAGACGGGCGTTCGCCACGTtggcccccccaccacccagcAGCTCTGTGCCCAGACTGACCGCTAAGCAGCAAAAGATGCTGTCCATCTTCTCCACGCGGTCCTGCATGAACCTGGAGTGGTCACAGAAGTGTCTACAGGACAATGCGTGGGATTTCAACAGAGCCTCACAGATCTTCACCCAGCTCAAGGCTCAAAGGAAGATCCCAGATGTGGCTTTCAAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167581 lncRNA upstream 33916 7135868 ~ 7137565 (+) False AMCG00011948
TU167582 lncRNA upstream 33916 7135868 ~ 7137565 (+) True AMCG00011948
TU167555 lncRNA upstream 52631 7118297 ~ 7118850 (+) True G133583
TU167556 lncRNA upstream 52853 7118297 ~ 7118628 (+) False G133583
TU167546 lncRNA upstream 58414 7112364 ~ 7113067 (+) True G133574
TU167594 lncRNA downstream 38073 7214235 ~ 7214462 (+) True G133617
TU167622 lncRNA downstream 178208 7354370 ~ 7354965 (+) True G133642
TU167653 lncRNA downstream 328920 7505082 ~ 7506119 (+) False G133667
TU167661 lncRNA downstream 333587 7509749 ~ 7519294 (+) True G133669
TU167674 lncRNA downstream 369121 7545283 ~ 7556712 (+) True G133681
AMCG00011948 mRNA upstream 31349 7136371 ~ 7140132 (+) False AMCG00011948
AMCG00011946 mRNA upstream 42000 7122970 ~ 7129481 (+) True AMCG00011946
AMCG00011947 mRNA upstream 60725 7103316 ~ 7110756 (+) True AMCG00011947
AMCG00011954 mRNA upstream 77353 7093100 ~ 7094128 (+) True AMCG00011954
AMCG00011939 mRNA upstream 280527 6877975 ~ 6890954 (+) True AMCG00011939
AMCG00011959 mRNA downstream 112885 7289047 ~ 7346943 (+) True AMCG00011959
AMCG00011958 mRNA downstream 170788 7346950 ~ 7361064 (+) True AMCG00011958
AMCG00011963 mRNA downstream 195022 7371184 ~ 7373535 (+) True AMCG00011963
AMCG00011962 mRNA downstream 206813 7382975 ~ 7383970 (+) True AMCG00011962
AMCG00011961 mRNA downstream 265226 7441388 ~ 7451671 (+) True AMCG00011961
TU167225 other upstream 612996 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 682273 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 914799 6255950 ~ 6256682 (+) False AMCG00011876
TU166896 other upstream 1283589 5887005 ~ 5887892 (+) False AMCG00011837
TU167596 other downstream 60779 7236941 ~ 7242300 (+) True G133619
TU167656 other downstream 328920 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 388646 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 389225 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 784536 7960698 ~ 7970918 (+) False AMCG00011986

Expression Profile