RNA id: TU167597


Basic Information

Item Value
RNA id TU167597
length 1105
RNA type TUCP
GC content 0.52
exon number 8
gene id AMCG00011957
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7214237 ~ 7240360 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gTGCAGTTTACATGAATTAATCATcatgctgtaatttatttattaaatgcaatactGTTCAATACTAGAAATGTCCTGTTACTttcacctgtctctctctgtgtatctctgtctctgtctatttCAGGAGGTACGTCTCTGACCGTGTCTGCACCAGCTATCCCCGGGGGTTCTGTGCCCTACAGCCTGTCCCTCAGTGCTAACATCCGCTCCCCCAGCGGGATCGACAGAGTCCAGTCCAACTGCCCCCTTGACCCACTGGAGCACCTCACTGAGGACAAGACCGAGGCCAAGgTTAATCTGTCTCCAGGTCATAAGTTTGATAGGGATGTGGAGCTGTTGGTCTATTATAAAAACGCCCACCAGCCCACTACCATCCTGGAGGCGGGGTTACCGTCTGCCACTCCTGgtttgTTGATGGCAGACACTGTGGCAATGCTCAGTTTCTACCCAGAGTTCCCTGTGGCTGTGCTGTCATCCCTGTCTTCCTGTGGGGAGTTCATCTTCCTAATGGATCGCTCCGGCAGCATGACATGCCAAATGAATGAAGGCACCGGAGGGCTACAGCGCATAAAGAGTGCCAGGGATACACTGCTGCTCCTGTTGAAGAGCCTGCCTCTGGGCTGCTACTTCAATATTTATGGCTTTGGGTCGACTTTTGAATCCTTCTTCCCtgacagtgtggtgtACACCCAGGACACTATGGCCTTGGCTGTGGAGAAGGTGAAAACTATGGAGGCTGACCTCGGAGGGACTGAGATTCTGGAGCCCCTGAAGGAGATCTACAGGAAACCCTGCCGAGATGGACACCCCCGCCAGctccttTTGTTTACAGATGGAGAAGTGGGAAACACCAAAGAGGTGATAGACCTGGTGAAGACTAATGCCCTCTCTCACAGGTGCTTTACCTTTGGCATTGGGGAGGGGGCCTCCAGTTCTCTGATCAAAGGAATGGCCAGAGAGGGATCAGGACACCCCCAGTTCATCACTGGGATGGACCGCATGCAGCCCAaggtGATGCAGTCTTTGCGCTTCGCTCTGCAGCCTGCAGTTCATGATATCTCTGTGAAATGGGACCTCCCGCCTGCAGTGAAGGTGTCTCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167584 lncRNA downstream 87183 7135868 ~ 7137524 (-) True G133607
TU167564 lncRNA downstream 158035 7066413 ~ 7066672 (-) True G133591
TU167543 lncRNA downstream 253999 6970293 ~ 6970708 (-) True G133571
TU167529 lncRNA downstream 331734 6892745 ~ 6892973 (-) False AMCG00011941
TU167518 lncRNA downstream 368008 6856221 ~ 6856699 (-) True G133547
TU167710 lncRNA upstream 256957 7486669 ~ 7549652 (-) False G133712
TU167723 lncRNA upstream 263158 7492870 ~ 7500924 (-) False G133713
TU167725 lncRNA upstream 321583 7551295 ~ 7575147 (-) False G133714
TU167729 lncRNA upstream 321583 7551295 ~ 7575147 (-) True G133714
TU167730 lncRNA upstream 321583 7551295 ~ 7575147 (-) False G133714
AMCG00011956 mRNA downstream 40568 7183669 ~ 7184139 (-) True AMCG00011956
AMCG00011949 mRNA downstream 71324 7144147 ~ 7153383 (-) True AMCG00011949
AMCG00011952 mRNA downstream 89500 7131863 ~ 7135207 (-) True AMCG00011952
AMCG00011950 mRNA downstream 102694 7112506 ~ 7122013 (-) True AMCG00011950
AMCG00011951 mRNA downstream 147235 7076740 ~ 7077472 (-) True AMCG00011951
AMCG00011965 mRNA upstream 167805 7397517 ~ 7398476 (-) True AMCG00011965
AMCG00011966 mRNA upstream 177531 7407243 ~ 7409540 (-) True AMCG00011966
AMCG00011964 mRNA upstream 187200 7416912 ~ 7434130 (-) True AMCG00011964
AMCG00011967 mRNA upstream 223886 7453598 ~ 7454226 (-) True AMCG00011967
AMCG00011969 mRNA upstream 281293 7511005 ~ 7528563 (-) True AMCG00011969
TU167490 other downstream 400119 6824264 ~ 6824588 (-) True G133526
TU167457 other downstream 454413 6768293 ~ 6770294 (-) False AMCG00011928
TU167424 other downstream 484171 6663132 ~ 6740536 (-) True AMCG00011924
TU167319 other downstream 675812 6530697 ~ 6548895 (-) True G133393
TU167316 other downstream 732741 6480086 ~ 6491966 (-) True AMCG00011913
TU167722 other upstream 263158 7492870 ~ 7495633 (-) True G133713
TU167719 other upstream 280037 7509749 ~ 7549652 (-) True G133712
TU167720 other upstream 280037 7509749 ~ 7549652 (-) False G133712
TU167712 other upstream 313863 7543575 ~ 7545105 (-) False G133712
TU167732 other upstream 315643 7545355 ~ 7556708 (-) True G133715

Expression Profile