RNA id: AMCG00011962



Basic Information


Item Value
RNA id AMCG00011962
length 996
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00011962
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7382975 ~ 7383970 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGAAACCTAACAGACTGTGACCACCTCTTTACCCTGGGTGCTCTCCCCATGTTCACAGTGGTCCTTCACTACATCCTGCTGGTGGTTGGGCTGCCCACCAACTGCTTGGCCATTTACGGTCTCCTCCGACTGGTCAAGGTGGATTATGTGACACCTGTCTATGCCGTCAATCTCCTCATCAACAACCTCATCCAGTTCTCCACCATACCTTTCTACATCAGCAGTTTAACCAACAGATACGCTTGCAGCTGGGAATTTGTGAATCTAGTAAGTGGGTCCATCTTTgacgtctgtgtgtgtgctggtgttgGCTTCCTGGTGTGTATCGCCCTGGAGAGGTACATGATTGTAGCCCACCCTCTGTGGTATCGCAGCAGCCGCAGCCTGCGGTACACCCGGCTTGTCTCCTTGGCCATCTGGGGGTTGTCCGTCTTTGTTGTCTCCATCAAAAGCTCCCTGGAGAACGTGAAGCCGACCGCAGGGCAGGTATTTAATGTGGTTTACCTGCTGATCCTCTTCCCCATCCCTCTGGTCCTTCTCATCTTCTTCTACGCGGCCACCTGGAGAGCCCTGAGTGGAGTCAGCTCGCTGCCAGCTGCAGAGAGGCAGAGGATCCTGCGCACACTGGCCCTCGTGCTCTTCATCTTTGCCTGCATCTTTGGGCCATACTTCCTGCTTAATCTCATCATCGACACCTTGACGTTCATGAAGGAAAATATTCCTCAGGGGCTGCTGGATTGCCAAAGAATCACCATGAACATCCGGTGCCTCAACCCCCTCCTGGACCCCTTCCTGTACATGTTTCTCAGGAATGACATCAGAGATGCACTGGACTCTTTCCCCTGTTGCCTGAGGATGGTCAGTGTGAGGAATTGCTGCAGGAGAGCCAGCACAGATCAGCAAGACATTGTCACAGAGACAGTCCAGACTCAGCCTTACACTGAGAAATCACATACTGTGGACTTAAAGAGGTCTGTCAGTGATGTGTCATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167622 lncRNA upstream 28010 7354370 ~ 7354965 (+) True G133642
TU167594 lncRNA upstream 168513 7214235 ~ 7214462 (+) True G133617
TU167581 lncRNA upstream 245410 7135868 ~ 7137565 (+) False AMCG00011948
TU167582 lncRNA upstream 245410 7135868 ~ 7137565 (+) True AMCG00011948
TU167556 lncRNA upstream 264347 7118297 ~ 7118628 (+) False G133583
TU167653 lncRNA downstream 121112 7505082 ~ 7506119 (+) False G133667
TU167661 lncRNA downstream 125779 7509749 ~ 7519294 (+) True G133669
TU167674 lncRNA downstream 161313 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA downstream 162674 7546644 ~ 7547755 (+) True G133682
TU167649 lncRNA downstream 167325 7551295 ~ 7575165 (+) True G133665
AMCG00011963 mRNA upstream 9440 7371184 ~ 7373535 (+) True AMCG00011963
AMCG00011958 mRNA upstream 21911 7346950 ~ 7361064 (+) True AMCG00011958
AMCG00011959 mRNA upstream 36032 7289047 ~ 7346943 (+) True AMCG00011959
AMCG00011955 mRNA upstream 206813 7171481 ~ 7176162 (+) True AMCG00011955
AMCG00011948 mRNA upstream 242843 7136371 ~ 7140132 (+) False AMCG00011948
AMCG00011961 mRNA downstream 57418 7441388 ~ 7451671 (+) True AMCG00011961
AMCG00011960 mRNA downstream 87745 7471715 ~ 7481630 (+) True AMCG00011960
AMCG00011971 mRNA downstream 175693 7559663 ~ 7575192 (+) True AMCG00011971
AMCG00011968 mRNA downstream 193386 7577356 ~ 7578348 (+) True AMCG00011968
AMCG00011972 mRNA downstream 215538 7599508 ~ 7683253 (+) True AMCG00011972
TU167596 other upstream 140675 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 824490 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 893767 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 1126293 6255950 ~ 6256682 (+) False AMCG00011876
TU166897 other upstream 1495083 5887005 ~ 5887892 (+) False AMCG00011837
TU167656 other downstream 121112 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 180838 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 181417 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 576728 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 644093 8028063 ~ 8032609 (+) False AMCG00011993

Expression Profile