RNA id: AMCG00011963


Basic Information

Item Value
RNA id AMCG00011963
length 327
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00011963
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7371184 ~ 7373535 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTGACGAAACTGTGTTCTTCATCACTGTGTTCTGCCTCGGCCTGCCTGCCAACTGCTGGGCCCTTTACAGGCTGTACCGCCTGTTCCAGTCTGGCAGCAGGGTCTCTGTCTACATCAACCTGCTCCTGGCAGACCTGCTCCAGATCGCTGCCCTGCCCACactgatttatgtttttctgaataatatatttaatgggTATGCTGTGATCAGAAATTGGATCCTTCTGTTTGTTAGTCAGGGATCCAGTATTGAGTTCTTGGTGCTTGTCTCCCTGGAGAGATACCTGGCCATCGCTCGGCCTGCCTGGTACCATCGCATCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167622 lncRNA upstream 16219 7354370 ~ 7354965 (+) True G133642
TU167594 lncRNA upstream 156722 7214235 ~ 7214462 (+) True G133617
TU167581 lncRNA upstream 233619 7135868 ~ 7137565 (+) False AMCG00011948
TU167582 lncRNA upstream 233619 7135868 ~ 7137565 (+) True AMCG00011948
TU167555 lncRNA upstream 252334 7118297 ~ 7118850 (+) True G133583
TU167653 lncRNA downstream 131547 7505082 ~ 7506119 (+) False G133667
TU167661 lncRNA downstream 136214 7509749 ~ 7519294 (+) True G133669
TU167674 lncRNA downstream 171748 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA downstream 173109 7546644 ~ 7547755 (+) True G133682
TU167649 lncRNA downstream 177760 7551295 ~ 7575165 (+) True G133665
AMCG00011958 mRNA upstream 10120 7346950 ~ 7361064 (+) True AMCG00011958
AMCG00011959 mRNA upstream 24241 7289047 ~ 7346943 (+) True AMCG00011959
AMCG00011955 mRNA upstream 195022 7171481 ~ 7176162 (+) True AMCG00011955
AMCG00011948 mRNA upstream 231052 7136371 ~ 7140132 (+) False AMCG00011948
AMCG00011946 mRNA upstream 241703 7122970 ~ 7129481 (+) True AMCG00011946
AMCG00011962 mRNA downstream 9440 7382975 ~ 7383970 (+) True AMCG00011962
AMCG00011961 mRNA downstream 67853 7441388 ~ 7451671 (+) True AMCG00011961
AMCG00011960 mRNA downstream 98180 7471715 ~ 7481630 (+) True AMCG00011960
AMCG00011971 mRNA downstream 186128 7559663 ~ 7575192 (+) True AMCG00011971
AMCG00011968 mRNA downstream 203821 7577356 ~ 7578348 (+) True AMCG00011968
TU167596 other upstream 128884 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 812699 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 881976 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 1114502 6255950 ~ 6256682 (+) False AMCG00011876
TU166897 other upstream 1483292 5887005 ~ 5887892 (+) False AMCG00011837
TU167656 other downstream 131547 7505082 ~ 7508751 (+) True G133667
TU167659 other downstream 191273 7564808 ~ 7566028 (+) False AMCG00011971
TU167660 other downstream 191852 7565387 ~ 7566346 (+) False AMCG00011971
TU167842 other downstream 587163 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 654528 8028063 ~ 8032609 (+) False AMCG00011993

Expression Profile