RNA id: AMCG00011965


Basic Information

Item Value
RNA id AMCG00011965
length 960
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00011965
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7397517 ~ 7398476 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAACCTATCAGATTGTGATCACCTCTATCCACTAGGTGCTCTCCCCATGTTCACAGTGGTGCTTCACTATGTTCTGCTGGTGGTCGGGCTGCCCTCCAACTGCCTGGCCATTTACGGCCTCTGCCGGCTTGTCAAGATAGACTATGTGATGCCCGTCTTTGCCATCAATCTCCTCATCGCTGACCTCATTCAGGTCACCATGACACCCATCTTAATTGGGAAGTACACCAGTAAACCGGTGTGCAGCTGGGATGCTGTGCACCTAGTTGATGGGGCCATCTTCAACGTCTGCGTGTGCGCCAGCATTGGTTTCCTTGTGTGCATCGCACTAGAGAGGTATGTGATCGTGGCCCACCCTCTGTGGTACCGCAGTCGCCGCAGCCTCAGGCACACTCGACTCGTGTCCCTGGCCACTTGGGTGGTGTCCATCCTCATCGTTTGCATCAAAAGCTCCCTGGAGAACCTGAAGCCAGCCGCAGGGCAGGTGTTCCACGTGGTTTACCTGCTGACCCTATTCCCCGTCCCACTGGTTCTCCTCGTTTTCGCCTATGTGGCCACCTGGAGAGCCCTGCTTAGGCTCAGCGTGCTGCCAGCTGCAGAGAAGAAGAGGATCCGGCACATGCTGGCCCTTGTCCTCTTCATCTTTGCTGGAATCTTCGGGCCGCACTTCTTGCTTTATCTCGTCATTGACACCTTCAAGTTCATGAAGGGAAAAATTCCTCAGGGGCTACTGGATTGCCAAGAAATCGCCTTAAACATCCGGTGCCTCAACCCCCTCCTGGACCCCTTCCTGTACATGTTTCTCAGAAATGATGTCAGAGGCGCTCTGGATTCTGTGCCCTGCTGCAGGAGGATGACCAAGGTGAGGGGTTGCTGCAAGAGAGCCAGCGCAGCTCAGGGAGACATGGGCATAGAGACAGTCCAGACTCAGCCTTACACTGAGCAGACCCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167600 lncRNA downstream 157157 7224707 ~ 7240360 (-) False AMCG00011957
TU167584 lncRNA downstream 259993 7135868 ~ 7137524 (-) True G133607
TU167564 lncRNA downstream 330845 7066413 ~ 7066672 (-) True G133591
TU167543 lncRNA downstream 426809 6970293 ~ 6970708 (-) True G133571
TU167529 lncRNA downstream 504544 6892745 ~ 6892973 (-) False AMCG00011941
TU167710 lncRNA upstream 88193 7486669 ~ 7549652 (-) False G133712
TU167723 lncRNA upstream 94394 7492870 ~ 7500924 (-) False G133713
TU167725 lncRNA upstream 152819 7551295 ~ 7575147 (-) False G133714
TU167729 lncRNA upstream 152819 7551295 ~ 7575147 (-) True G133714
TU167730 lncRNA upstream 152819 7551295 ~ 7575147 (-) False G133714
AMCG00011957 mRNA downstream 165082 7214237 ~ 7232435 (-) False AMCG00011957
AMCG00011956 mRNA downstream 213378 7183669 ~ 7184139 (-) True AMCG00011956
AMCG00011949 mRNA downstream 244134 7144147 ~ 7153383 (-) True AMCG00011949
AMCG00011952 mRNA downstream 262310 7131863 ~ 7135207 (-) True AMCG00011952
AMCG00011950 mRNA downstream 275504 7112506 ~ 7122013 (-) True AMCG00011950
AMCG00011966 mRNA upstream 8767 7407243 ~ 7409540 (-) True AMCG00011966
AMCG00011964 mRNA upstream 18436 7416912 ~ 7434130 (-) True AMCG00011964
AMCG00011967 mRNA upstream 55122 7453598 ~ 7454226 (-) True AMCG00011967
AMCG00011969 mRNA upstream 112529 7511005 ~ 7528563 (-) True AMCG00011969
AMCG00011970 mRNA upstream 134389 7532865 ~ 7554876 (-) True AMCG00011970
TU167599 other downstream 157537 7224707 ~ 7239980 (-) False AMCG00011957
TU167597 other downstream 167805 7224707 ~ 7229712 (-) True AMCG00011957
TU167490 other downstream 572929 6824264 ~ 6824588 (-) True G133526
TU167457 other downstream 627223 6768293 ~ 6770294 (-) False AMCG00011928
TU167424 other downstream 656981 6663132 ~ 6740536 (-) True AMCG00011924
TU167722 other upstream 94394 7492870 ~ 7495633 (-) True G133713
TU167719 other upstream 111273 7509749 ~ 7549652 (-) True G133712
TU167720 other upstream 111273 7509749 ~ 7549652 (-) False G133712
TU167712 other upstream 145099 7543575 ~ 7545105 (-) False G133712
TU167732 other upstream 146879 7545355 ~ 7556708 (-) True G133715

Expression Profile