RNA id: TU167660



Basic Information


Item Value
RNA id TU167660
length 460
RNA type TUCP
GC content 0.63
exon number 4
gene id AMCG00011971
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7559663 ~ 7575192 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cccagaCTCTATCAGGTCATGAGGTGTCTGTCCGCAGCCTGTCCTTCTCTCCGTCTGGGGGGCTCCTGACCTCAGGCTGTCTCTCTGGGGATGTGAGGCTGTGGTCAGCACCAACCTGGAAATGTGTAGGGCACTACAGGGCCCACCAGGGGGCAACAGAGGTGCTGCAGTTCATGGAGGGAGGCAGGCTCCTGCTGAGCGGTGGCTCGGACAACATGGTGCATCTGTGGTCTGGGAGTTTGGGTCTCTCTATCGGCCAGCTGGGGGACAGCATGGAACGGTCTGCAGCATCCCAGGGGCAGGGGTCCGGCCGCTCGGCAATGGTGGAATCTCCCGCCCTGTGCGTGGCGGTCGCTGGCGACTACGTTGCTGTGGGTTACCAAAGCGACGGGATCCACCTGTACCATCGGGATTCGGGAGAGTGACGGTCGGTAAGCGAGGGCCCCGGGGTATCTGTTCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167674 lncRNA upstream 8675 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA upstream 17632 7546644 ~ 7547755 (+) True G133682
TU167661 lncRNA upstream 46093 7509749 ~ 7519294 (+) True G133669
TU167653 lncRNA upstream 59268 7505082 ~ 7506119 (+) False G133667
TU167622 lncRNA upstream 210422 7354370 ~ 7354965 (+) True G133642
TU167816 lncRNA downstream 264218 7830564 ~ 7843471 (+) True G133783
TU167857 lncRNA downstream 358790 7925136 ~ 7926226 (+) False AMCG00011987
TU167871 lncRNA downstream 436434 8002780 ~ 8003512 (+) True G133820
TU167877 lncRNA downstream 496247 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA downstream 513409 8079755 ~ 8100437 (+) True G133832
AMCG00011960 mRNA upstream 83757 7471715 ~ 7481630 (+) True AMCG00011960
AMCG00011961 mRNA upstream 113716 7441388 ~ 7451671 (+) True AMCG00011961
AMCG00011962 mRNA upstream 181417 7382975 ~ 7383970 (+) True AMCG00011962
AMCG00011963 mRNA upstream 191852 7371184 ~ 7373535 (+) True AMCG00011963
AMCG00011958 mRNA upstream 204323 7346950 ~ 7361064 (+) True AMCG00011958
AMCG00011968 mRNA downstream 11010 7577356 ~ 7578348 (+) True AMCG00011968
AMCG00011972 mRNA downstream 33162 7599508 ~ 7683253 (+) True AMCG00011972
AMCG00011977 mRNA downstream 128667 7695013 ~ 7754715 (+) True AMCG00011977
AMCG00011976 mRNA downstream 212880 7779226 ~ 7782991 (+) True AMCG00011976
AMCG00011975 mRNA downstream 219504 7785850 ~ 7788725 (+) True AMCG00011975
TU167656 other upstream 56636 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 323087 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 1006902 6545388 ~ 6558485 (+) False AMCG00011909
TU167207 other upstream 1076179 6483947 ~ 6489208 (+) True G133327
TU167105 other upstream 1308705 6255950 ~ 6256682 (+) False AMCG00011876
TU167842 other downstream 394352 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 461717 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 485778 8052124 ~ 8055021 (+) True G133822
TU168052 other downstream 816767 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 951668 8518014 ~ 8519026 (+) False AMCG00012008

Expression Profile