RNA id: AMCG00011973


Basic Information

Item Value
RNA id AMCG00011973
length 3972
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00011973
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7577314 ~ 7599762 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACAACTCCACAATCTGTGACATCGACCTCAACGCTGACCAGATCTTCCTCCCGGTGCTGTACGGCTGCGTCTTCTGCATTGGGCTGCCCACCAATTGCCTGGCGCTCTATGGCATGTTCTGCCTGGTCAAGACTGACTACACCCTGCCCATCTACATCATCAACCTCCTCCTCGCTGATCTCCTGCAGATCGGCACCCTTCCCCTCTGGATGGACTACTACAGCAGGGGCCATCAGTGGCGTTTCGGGCATGCTGCTTGCAAAATCATTGGCTGTGTGTTCTACATCAGCCTGTTTGTCAGCATCTGCTTCATGTGCTGTGTCTCCCTGGAACGATACCTGGCCATCGTGCACCCTTTGTGGTTTCAGAGCCAGCGCATGGTCAGGAACGTCTACCTGCTGAGTCTAGCTGTGTGGCTGTTCTTCACTTCTGCAGTCGCTGTGGGCTTTAAGATGGGATTTGAGGGAAACACCACAAGCACCCTGTGCATGGAAGAGTTCCCCTCCAAAACTGATTTCGCTCTCTTCCAGTTGGTTTCCATCCCATTCACCTTCCTCCTGCCCCTCCTGTTCCTGCTGTTCGTGTTCTTCCGTGTGCGGAGCAGCCTGGCCCGCTCGGTCTCTCTCAGTGGGCAGGAGAAGAGGAGGTTCAACGGTCTCCTGCTCCTGATTGTACTCATGTTCCTTCTGATCTTCGGTCCGTACCACCTGGTCAGAATGGTCAGGTATGCAGGAGTAATCAGCGTCTCTGACAAGTGCCACTTTGAGTCGAGGATCTTCCTCCCATTCCAAATCGCCTTGGGTCTACTGAGTGTGAATGCTATACTGGACCCCATCATGTACATATTCATCTACAAGAGCAGCAGGGAGAAGATGCTGGCCTCCTTCCCTTGTCTTCATAGGATGGGACGGTCCAGGGAGATCGCCATGAACAACTCCAGTGCCTGTGACATTGACTTCAGCGCTGACCAGATCTTCTTTCCGGTGCTCTATGgctgtgttttctgcattggGCTGCCAGCCAACTGCCTGGCACTCTACAGCCTGTACCGCCTTGTCAAGGCTGACAATGCTCTACCTGTCTATGTCATCAACCTCCTCCTCACTGACCTTCTGCAAATCATCACCCTGCCCCTCTGGATGGACTACTACAGCAGAGGTCACCAGTGGCGTTTTGGGGATGCTGCTTGTGGCATTTGCAGTTGTATATTAGGCATCTGCCTGATTGTCAGCATCAGCTTCATGTGCTGTGTGGCCTGTGAGAGGTACCTGGCCGTTGTCCACCCGCTGAGGTTCCAGCGCCAACGCAGACTGAAGACCACTTATGTGCTGTGCCTGGCTGTGTGGACTTTTGCCCTATCAGGGATTTTAGCAGCCTATTTAATTGGTTTTGGGCCAGATAAAAGAAAGCTTTGCTTTGAACACTATCCAAGAGATCCCAGATATGTCATCTATCGTCTGGTTATGTTTCCCCTTACCTTCATCCCACCTCTAAGCCTCTTAGTTCGACTCGCCCTCGCCTCCACCCCCTTCATGTCCGACAAGGAGAAGAAAAGAGTCAACCTGTTGCTGCTCGCTGTAATGGTGATCTTCATATTAGTTTTCGGGCCGTACCACGTTGTTGGCTTCATTGTGTACACAGGCACGTCCTTGGCCAAGTCCCGTTGTGTTTATGAGTCCAAGATGTTCATCTTCATGCAGGTCTCGGGGGGAATGCTGAGTCTGAACGTGGTGATGGACCCCATCCTGTACATCTTCCTCAGGAACGATGTCACAGAGGAACTGGACTCTGCGCCCTGCTGCCTGAGGCTTCTGGGCCTCGTGAACTACCTGATGGGACCCAGAGCCAagcagggagacagagagactagCTATAATCCCATTTGGAAGGAGAGCCAATTTCCACCGAGGGAAAAACTCAGTATTACGGCTATTGATGGCCAAAGCCACCAGGATAACCGCAAAGCTTCCCTTCAGCAGAACCAAAACAGATCAGCTTCTCCTGGCCTGTCTCTCGCTCATCCTACTGCAGCCATGAACAACTTCACAATCTGTGACATCGACCTCAGCGCTGACCAGATCTTCCTCCCTGTGCTGTACGGCTGCGTCTTCTGTGTCGGGCTGCCCGCCAACTGCCTGGCGCTCTACGGCCTGTACCGCCTGATCAAGGCCGACTATGCCCTTCCCATCTACATCATCAACCTCCTGCTGTCCGACCTCCTGCACATAGCCACCCTGCCCTTCTGGATCCACTACTACAGAAGGGAACGCAAGTGGAGGTTCGAGGACATTACCTGCAGGGTGAACGGCTACGCGTTCGGGACCAGTCTCTATGCCAGCATTGCCTTCATGTGCTGCATCGCTGTGGAGAGGTATCAGGCCATCGTATTCCCACTGTGGTTCCGGTTTCGGCCCAGAGTGTCATCCGCCTACTGGCTGTGTCTGGCGGTTTGGGTAGTGGTAGTTGTTACGCAAGCTGTGGGGCACAACCTTGGTTTCCTAAACCAAACCCCGAACCAAAATCAGTCTCTCTGCTTGGAGAGCTACCCAAAGGACCAGAAGTTTGGTGTCTTCCAGCTGATTGTGATGCCCTTCACCTTCCTGCTCCCCATCCTCCTCTTTGGCTTCCTCTCCCTCAGCATCCACTGGAAGCTCCAGAGCAGCACCCTCATGCCAacagagaagaggaagaggatcATTCAGCTGCTAGTGCTGGTTCTGCTCATATACATCCTGATCTATGGGCCCTACCACCTCATGGCGTTCATCCGCTGTATTGGTATACTGACAGTTGAGAACACGTGCCAGTACGAGTCCAGGGTCTTCCTCTCCAGCCGGGTCACCGTGGGCATCCTCAGCCTGAGCCCCCTCGTCGACCCTTTCATCTACATCTTTGTCGGGAGGGATTTCAGGGAAAAACTGGTCTACTGCTCTTGCTGGGAGGGACAACAGACTGACTGCCAAGACGGAAGACCCACTCATTCTCTGACCCTGGTCATCCACGGTGCTCCCCCCACGGCTCCGCGAGCTCACCAGCCTCTGAAACAAGGGCAAGGGGACCAGGGTTTCACGGACATCATTCCGGAGGAAGATGTAGATGATGGGATCCACCACGGGGTTGAGGCTGAGGATCCCCATGGTGATCCGACCGTAGAGGAAGACACTGGACTCGTACTGGCACCGGTCCTGGACTGTCAGCGTCCCGATGCAGTGGATGAAGCCAAGGATGTGGTAGGGCCCGAAAATCATGACATAGATGAGCAGGACCAAGACCAGCAAGTGCATGACCCTCTTCTTTTTCCGGGGGGACATGAAGGAGTCTCGCTGGAACCTCCGGTGGATGCTGAGGGAGAGGCAACTGAAGAGGAGGACTGGGAGCAGGAAGGTGAAGGGCATGACGATCAACTGGAAGATCGCAAACTTGTGGTCCTTGGGGTAGGTTTCCAAACACAATGTTTCGTTGTGGGTGCGCTCAAAGCCTACGTGGTACCCCACCGCCTGCGTTCCCACGATCAGCACCCACAGTACAAGACACAGCATGTGCGCAAACTTGAGCATGGGCTGGCTCTGGAACCACAGTGGGTGCACAATGGCCAAATACCTCTCCAGGGCTATGCAGCACATGAACAGTACGCTGCTGTACAGGCTGGTGGCATAGGCATAACTCGCCAGCCTGCAAGTGGCATCACCGAACCGCCACTCGTGGCCCTGGCTGTAGTAATCCACCCAGAGGGGCAGGGTGACGATCTGCAGGAGGTCACCCAGGAGGAGGTGGATAACGTATACAGGCAGTGCGTATTCGGCCTTGATCAGGCGGTACAGGCCATAGAGGGCCAGGCAGTTGGCAGGCAGCCCGACGCAGAAGACGGAGCCGTACAGCACAGGGAGGAAGATCTGCTCTGCACTGAAGTTCACACAGTTACTCATGGTTTTGGCGGAAGATCGGGGGGGTGGAGGGTGCTTAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167725 lncRNA downstream 2167 7551295 ~ 7575147 (-) False G133714
TU167729 lncRNA downstream 2167 7551295 ~ 7575147 (-) True G133714
TU167730 lncRNA downstream 2167 7551295 ~ 7575147 (-) False G133714
TU167710 lncRNA downstream 27662 7486669 ~ 7549652 (-) False G133712
TU167723 lncRNA downstream 76390 7492870 ~ 7500924 (-) False G133713
TU167751 lncRNA upstream 64609 7664371 ~ 7665286 (-) False AMCG00011974
TU167971 lncRNA upstream 404256 8004018 ~ 8052245 (-) True G133891
TU167983 lncRNA upstream 447467 8047229 ~ 8059876 (-) False AMCG00011995
TU168002 lncRNA upstream 588527 8188289 ~ 8188693 (-) True G133915
TU168111 lncRNA upstream 831226 8430988 ~ 8483657 (-) True G133997
AMCG00011970 mRNA downstream 22438 7532865 ~ 7554876 (-) True AMCG00011970
AMCG00011969 mRNA downstream 48751 7511005 ~ 7528563 (-) True AMCG00011969
AMCG00011967 mRNA downstream 123088 7453598 ~ 7454226 (-) True AMCG00011967
AMCG00011964 mRNA downstream 143184 7416912 ~ 7434130 (-) True AMCG00011964
AMCG00011966 mRNA downstream 167774 7407243 ~ 7409540 (-) True AMCG00011966
AMCG00011974 mRNA upstream 51794 7651556 ~ 7676231 (-) True AMCG00011974
AMCG00011978 mRNA upstream 137686 7737448 ~ 7778762 (-) True AMCG00011978
AMCG00011984 mRNA upstream 231542 7831304 ~ 7841349 (-) True AMCG00011984
AMCG00011983 mRNA upstream 256663 7856425 ~ 7870202 (-) True AMCG00011983
AMCG00011982 mRNA upstream 271781 7871543 ~ 7874358 (-) True AMCG00011982
TU167732 other downstream 20606 7545355 ~ 7556708 (-) True G133715
TU167719 other downstream 27662 7509749 ~ 7549652 (-) True G133712
TU167720 other downstream 27662 7509749 ~ 7549652 (-) False G133712
TU167712 other downstream 32209 7543575 ~ 7545105 (-) False G133712
TU167722 other downstream 81681 7492870 ~ 7495633 (-) True G133713
TU168124 other upstream 889438 8489200 ~ 8565264 (-) True G134005
TU168169 other upstream 1099649 8699411 ~ 8701641 (-) True G134036
TU168269 other upstream 1541062 9140824 ~ 9145295 (-) True G134119
TU168464 other upstream 1935506 9535268 ~ 9538892 (-) True G134244
TU168522 other upstream 2013148 9612910 ~ 9625601 (-) False AMCG00012058

Expression Profile