RNA id: AMCG00011979


Basic Information

Item Value
RNA id AMCG00011979
length 2073
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00011979
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7791013 ~ 7803080 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTTCCAGCACTGAGGTTGGCACTGGTCTTTCTGGTTGATTAATTCCCTCGCAAGGATCTCAAGTATCGCAAAGCTTAGGATGGACAGCCAGGCGTACTTCACTTTCCTGCTGATTGGGAGCGCCCTCCTACTGGGTGTGAGGGGAGATCGACAACTTTGCCCCACGGGAGTCAACCTGACAGGCCTCCAGAAAAGTAACAGTAGCGCTCTCTTACAGCTCAACATCAGCCAGGCCTTCTACACAGTAGGAACCAACGTTACAGTGACTCTGGTGTGGAATTCCAACTCCAGCTTCGATCAGGTCTACCTCCAGGCCCAGACGATGGGGCAAGGGTCTCTGGTTGGGACGTTCACCCCCCTAGATCCTCGTTGGAGAGTGACAACATGCAGTAACAGTACAAACGCTCTGAGCTTCAATAACACCAACAATATGACGTCCATTGCAGCTACGTGGCTGACCACCGCAGGGTTGGAGCAGGTGAATTTCAGtgCAATTGTCATTAGAAATAACACGTACTGGAGTGTCATGCAAAGTCTGGCTCAAAACATCGGCAGTCAAAATATCAGCAGTCAAAATATCAGCAGTCATAACATCAGCAGTCAAAATATCAGCAGTCAAAATATCAGCAGTCAAAACGTGAGCAGTCAAAACATCAGCAGTCTTCCAAACGTCATTGTGAGCGTCCCCCTGGCGACCATTACCAACGTAAAGTGCAACACGACAAAAACCTGCCTTGAATTTCCCATGGGGTGCAACCCAGCGGCAATTGAAAACTGTTTGTTTGCGTCCACCTCAACCGCCTCCACCAATGGCAAAGACGCCCTCATCGAAATCAAAGGACAGTCCAGTGGCTACATCATGGCTGGCTTGTCACCTAATTCAACACTGaaaGGCGACGCCTTCATCTGCGCCAAGCTGGAGAATGGAAATTTGACGTTCCTCAAAGCCAGATACAATGGCGGGTCTGTGGACACCATCAAGGGCTCTGTGAACGGCAGTGATATTCAGTGCTCCTTCATCGTCAGGAACGTCAGCACCGCAGTGACCAGAAGCGCAGACACTCAATTCTACATCGGAGTGGCCATTGGGAATATTACTAATGGAATGCTGGGACAGCCAGTAGTTAAAGTCTCCAGCAAAACTGCACTGGATCTCGTGCAGACCTCCAGTGGAAGGGGCCTCCTGCCCACAGCTTACGtcgTGTTAATGTTGGCTGCTTTGCTGACACTCCGGGTGCTGTGATGTCACTAAACAACCAGTCATGTGCACTTGCCTTCCAAAAACCCACACTCAGGATAAAAACTATTTAGGGGAGGGGGTGCTAAAATTCATTTCTAACTGTTCTGTCCTTCTGTATAGTTGTAAAGTGTGTTGAAAGTTGTTTTACCATCTAGCGCCATCTACTGGTGAGCTGAAGGGAGGGAAAGAAGGCAAGGAACTCGCACAACCAGCTCTCTCCCTTCCCACATGCTGGAAGAATgctagaaaaaacaacaaacataatcataattatactTATTAGAATTGAATCTACTGATCAACATCAACTATATTAGGATTTGCAAATTCATAATAAGGATACATTTCTAAAAGGGGTTTGGGGTGTTTTCATGTCATTTATTCTCAAACTGTCACGGAAactggaaaagaagaaaaagaaagccaaCAAACTCTCTGTGTAGAATTCGGGAAGGGGCGCCCTCGTGTCATGTGGCATGACCAACACAAACAGGGACATGACTGTGCGGTTTGTCCTAGAGGTCAAGCTTGTTGAATGAAGGCGTGCCCCCCTCCCTCAGCACAGGGAACGGTTAGTGAGAAATCTGTGGCTTGTATGAGGAGCTCAAGTCTAGTGCACTGCAGTGAGAGCAGTGTCTGGGTTTAGAAGCACCCAGgtacaaaaatacagatacaatgCAGGCTACTTCCACAGTCTGAGATGAGGATTGGAAGGGCCAGCTTCTCAATCTTTTCATAAAATTGACGTTTCTTTCTATgagcattttaatttttctgaaCATAAAACAGGGCAGGTATATTAATACTTGTCTTGTGAAAAATAATGAGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167649 lncRNA upstream 215848 7551295 ~ 7575165 (+) True G133665
TU167674 lncRNA upstream 234301 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA upstream 243258 7546644 ~ 7547755 (+) True G133682
TU167661 lncRNA upstream 271719 7509749 ~ 7519294 (+) True G133669
TU167653 lncRNA upstream 284894 7505082 ~ 7506119 (+) False G133667
TU167816 lncRNA downstream 27484 7830564 ~ 7843471 (+) True G133783
TU167857 lncRNA downstream 122056 7925136 ~ 7926226 (+) False AMCG00011987
TU167871 lncRNA downstream 199700 8002780 ~ 8003512 (+) True G133820
TU167877 lncRNA downstream 259513 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA downstream 276675 8079755 ~ 8100437 (+) True G133832
AMCG00011975 mRNA upstream 2288 7785850 ~ 7788725 (+) True AMCG00011975
AMCG00011976 mRNA upstream 8022 7779226 ~ 7782991 (+) True AMCG00011976
AMCG00011977 mRNA upstream 36298 7695013 ~ 7754715 (+) True AMCG00011977
AMCG00011972 mRNA upstream 107760 7599508 ~ 7683253 (+) True AMCG00011972
AMCG00011968 mRNA upstream 212665 7577356 ~ 7578348 (+) True AMCG00011968
AMCG00011981 mRNA downstream 13016 7816096 ~ 7820392 (+) True AMCG00011981
AMCG00011980 mRNA downstream 75095 7878175 ~ 7884261 (+) True AMCG00011980
AMCG00011987 mRNA downstream 122513 7925593 ~ 7928238 (+) True AMCG00011987
AMCG00011985 mRNA downstream 128715 7931795 ~ 7955013 (+) True AMCG00011985
AMCG00011986 mRNA downstream 167377 7970457 ~ 7976097 (+) True AMCG00011986
TU167660 other upstream 224667 7565387 ~ 7566346 (+) False AMCG00011971
TU167659 other upstream 224985 7564808 ~ 7566028 (+) False AMCG00011971
TU167656 other upstream 282262 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 548713 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 1232528 6545388 ~ 6558485 (+) False AMCG00011909
TU167842 other downstream 157618 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 224983 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 249044 8052124 ~ 8055021 (+) True G133822
TU168052 other downstream 580033 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 714934 8518014 ~ 8519026 (+) False AMCG00012008

Expression Profile