RNA id: AMCG00011980


Basic Information

Item Value
RNA id AMCG00011980
length 2123
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00011980
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7878175 ~ 7884261 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGTCGCAGTCTGGGATTACATCTAATAATCCGTTGTCCCGTTGCTGTATGTCCACCCTGTAGTATGTGGTGGTAGTAGCGGGGCACCTGCGTGAAGTACCGCGATAGTGACCGGTGCTGCACACCTCGCCGTACCGGGGACCACCGCGGTGACGTCATCGGCGGCACCGGTGTGACCGTGCAGTGAGTCGCAAGGGGATGAGGCGAGAGGAGTCGGACTCTAACGGCCAGCTGTACTCCTCACCGGACACCTCAGAGCAGGACTGCGAGACCTGTGTAAAAGGGGAGGAGGGCGGGCGCTCCAGAGGGCTGGTGACTCGATTCTCAGAGGGCTACGGCACCGAGGCTGTCCCTCAGGGAGAGAGCGACGCGGACGCCGATATAGAGGACACTGACAACAGGCTCCAGGAGGCGGAGTCCCTGCAGCGCATCAGCTCCAAGCGACGTCGCCGCCAGCGAATCACCAAGCAGGACACCACGGAGAGCGAGGACGACGGGGGGCGGAGCCACAGGgaGAGCGTGTCCCAGGTTCGTCCGCTGGTCCTGGGCCGACCGTGCTCGGGGGGCTCTGTGTGCCCCCAGCCTGGGCCAGGGGCCAGTGTGGGTGGGAAGGGGGCAGTGATGTGGCCCTCCAGCCTGCTGCCCTGGCCCCTGGCCCTGTccctcctcctgctccctctATCCATCCTGCTGCTGATGGCTCTGTTGCCCCTCGTCAGCACGTgaacccccccccactccccctctctctctcactccccctgGCTCTTTCATACTCtcactctccatctctccctctgtcttttgTCTCTCCATccattttccttctcttcctctcccaaTTCTGTGGGACCTCACTTACTCAactttccctccccctctctctcaccttttCAGCTCTCTCATCGCGCCcagactctctctcttctcactcatttacacactgtaacacattGAACAGTTCCCAGTtctgtatctctctccctcccactctttccctctctctctccctttctcatTCTCACACGCACTGCAACAGACCTCTCCAGCTAGCACCCCTCCCCTGTCTCCGATTCTCTCCCTCGCACCAACGCGCTCGCAGTTCACACCGAACAGCTCAGCACCTCCCCCGACCTCCACCCCCACCCAGACACAGACTCGCCAGAAGcaccctgctctctctctccgctgCCAAAGCCCGGCACCACTTCAGTTATGTAACAGAGAGCTTTTGCACAGAGCAGGAGaccctgtactgtactgctggaCACCCCTGACAAAGACGTGattaaggaaaaaagtaaataaagtagaGAATGTGTTGGTGCACATGAGCTACAGAGAGGAGCAAAACTATGTCCAGGTGAGGCGGGAGCACAGAGGCGTGAGCGAGGAGCGCGAGGGCGAAACCCGGTTCTGAACACTGTGAGCTGACGAGGGGGAAATGTACCGTCCACTGTCTAACCTGCTGTACCATGCTGAGCTTTGACAACCAGTGACTGAAACCCAGTGGGACTTTTACGCTCTTCTCTCCCCatatccccctcccccagcagTGGATATGGAAGGGGGCCACTCAACGATTGTGTTGCCTTCACTCGGCTACATCATCCAGACCCCCCTCTCAGCGCCAGGGCTCCGGTCAGTTGGcgcagtgtggagtagcagaTTTGTCACCGTGCTGGGGAGGTTGGCACCCAGAGGAATGCTTGAGATGACGGTTCGATGGCGGCGGGTGGGGTCTGACTGCACACGCTACCCTGACGTTGAATGCTTCTCCCCTCAATGATCGACACATGCTGGGGGGTCTCGGCTGCTGCAGCAGTGGACGCTACCCAGCAATAAAGACACGCGGTGGCCCCCGCTAGAAGCATCCCCTCTCGCACTGTGCAAAGACTCCTGTGTGAATCAATGCCCCTTCCTGCTGtgaatcattttcttttcaactttttatttatatagtttgtttCTCACCAGCCCTCAAGCCAACACTGtttccctccccaccccaccccaccccacccccacaaagCCTCAGGACACGGAAGAACcaactgcattttgtttttgttttcatttgtgtgtgttttttttgcaaataataaaatattgttttctccTG

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167816 lncRNA upstream 34704 7830564 ~ 7843471 (+) True G133783
TU167649 lncRNA upstream 303010 7551295 ~ 7575165 (+) True G133665
TU167674 lncRNA upstream 321463 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA upstream 330420 7546644 ~ 7547755 (+) True G133682
TU167661 lncRNA upstream 358881 7509749 ~ 7519294 (+) True G133669
TU167857 lncRNA downstream 40875 7925136 ~ 7926226 (+) False AMCG00011987
TU167871 lncRNA downstream 118519 8002780 ~ 8003512 (+) True G133820
TU167877 lncRNA downstream 178332 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA downstream 195494 8079755 ~ 8100437 (+) True G133832
TU167885 lncRNA downstream 236638 8120899 ~ 8124699 (+) True G133833
AMCG00011981 mRNA upstream 57783 7816096 ~ 7820392 (+) True AMCG00011981
AMCG00011979 mRNA upstream 75095 7791013 ~ 7803080 (+) True AMCG00011979
AMCG00011975 mRNA upstream 89450 7785850 ~ 7788725 (+) True AMCG00011975
AMCG00011976 mRNA upstream 95184 7779226 ~ 7782991 (+) True AMCG00011976
AMCG00011977 mRNA upstream 123460 7695013 ~ 7754715 (+) True AMCG00011977
AMCG00011987 mRNA downstream 41332 7925593 ~ 7928238 (+) True AMCG00011987
AMCG00011985 mRNA downstream 47534 7931795 ~ 7955013 (+) True AMCG00011985
AMCG00011986 mRNA downstream 86196 7970457 ~ 7976097 (+) True AMCG00011986
AMCG00011992 mRNA downstream 114967 7999228 ~ 8016887 (+) True AMCG00011992
AMCG00011994 mRNA downstream 136543 8020804 ~ 8025061 (+) True AMCG00011994
TU167660 other upstream 311829 7565387 ~ 7566346 (+) False AMCG00011971
TU167659 other upstream 312147 7564808 ~ 7566028 (+) False AMCG00011971
TU167656 other upstream 369424 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 635875 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 1319690 6545388 ~ 6558485 (+) False AMCG00011909
TU167842 other downstream 76437 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 143802 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 167863 8052124 ~ 8055021 (+) True G133822
TU168052 other downstream 498852 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 633753 8518014 ~ 8519026 (+) False AMCG00012008

Expression Profile