RNA id: AMCG00011982


Basic Information

Item Value
RNA id AMCG00011982
length 1500
RNA type mRNA
GC content 0.64
exon number 7
gene id AMCG00011982
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7871543 ~ 7874358 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAACAAGACGACGCAAAAGGGACACTCCCCCCTGGCCCTGACCCTTCCCCCAACCTGGACCTGGACCAATCCTGGGGTTTCCGCCTGAGACATGCCTCCCGACTCCGCCTCGATGCCTTGGACTTCACCGACCTGTgggaggagggggagctggGATTGGACATCtctgaggaggaggacgaggaagGGCAGGAGGACAATGAGGCGGGGTCAGTCGCTGGGGAGCAGGAAGGAGGCGGGGTCATCACACAAGCCCAGAATCTGCCTCCActtccacctcctcctcccctggcgcctcccccaccccctccttgTACAAATGGCACCCCCCTGCCCTCCAAGGGGCAGACCCTGCGGCTACACTGGAGGGAGGTACTGTGCCTCCCGGTACTGCCCAGAGTCAGCCGTTTTGGGCCCGAGTCCATCTGGGCCGGGCTGGAGCCGGTCAGCATCGACACCGGTCAGCTGGAGCTCCTGTTCCAGTCCAAATCCAGCTCTCTGGGGTCTGTCAAGtCTCAGCAGCCCCGCCcccagtgtgtgtcagtgctgtgtgtgaagCGCAGCAACATCGTGACCATCGCCCTGAGCCGCCTGCCGCCCCCCCACCTCATCGCCCACGCCATTGTCGCCATGGACACCTGCGTCTTGGACAGGGAGGATATCCAGaGGCTGCAGGCTCTGGTGCCCAGTGAAGAGGAGCTGACTCTGATCAAGGAGGCCCAGCGGAAATCCCCCTGCTCGCCCTTAGCTTCGGCTGAGCTCTGCCTGCTCACGCTGGGCTCGGTGCCTAACCTGCGGCCAAGGCTGGAGCTGTGGGCCTTTACTTTGGACTATGACACCctagagagaGAGATCGCAGAACCTCTTTTCCACCTCAAACTGGCCATGGAGCAGCTGGCCAGCAACAAGACGTTCCGCTGTATCCTAGCCACCGTGCTGGCCATTGGCAACTTCCTCAACGGCCGCAAGgcgAAGGGGTTTGAGCTGGGGTACCTGGGGCAGCTGGCTCAGGTCCGAGACACAGCAAGCCGGCGCCCCCTACTGCACCACACCTGCTGCATCTTGCTGGACTGCTTCCCCCACTGCAGCGACCTGCACTCCGAGATCAGCGCCGTGTCCCGGGCCAGCAAGTGTGATTATTCCCAGGTGCAGAGCAGCCTGGCTCAGTTGGAGCTGCACTGCCAGGCAGCAAGGGAGCAGCTGAGGGTGCTGGAGGCGGGGCCTGTGAGGATGGGCGTGGCTGACTTCCTGCAGGAGAGCGAGGAGAGGCTGGCCGTGTTGAGGGCCGTGCACCGCCGAGTCATCAACAGgttCCACTCCTTCCTGCTGTTCCTGGGTTACTGCCGCGGGACGGTGAGGGAGATGGAGCCGGGGCAGTTCTGCAAGAGCGTCAGTGACTTCGCCCTGGAGTACCGGGCCGCACAACTCAATGTGCTGCAGCAGCGCCAGAGGCACACGCACCCGCGCGCCAGCACACACACGCCACCCCCAGCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167751 lncRNA downstream 206257 7664371 ~ 7665286 (-) False AMCG00011974
TU167725 lncRNA downstream 296396 7551295 ~ 7575147 (-) False G133714
TU167729 lncRNA downstream 296396 7551295 ~ 7575147 (-) True G133714
TU167730 lncRNA downstream 296396 7551295 ~ 7575147 (-) False G133714
TU167723 lncRNA downstream 370619 7492870 ~ 7500924 (-) False G133713
TU167971 lncRNA upstream 129660 8004018 ~ 8052245 (-) True G133891
TU167983 lncRNA upstream 172871 8047229 ~ 8059876 (-) False AMCG00011995
TU168002 lncRNA upstream 313931 8188289 ~ 8188693 (-) True G133915
TU168111 lncRNA upstream 556630 8430988 ~ 8483657 (-) True G133997
TU168210 lncRNA upstream 928049 8802407 ~ 8802986 (-) True G134069
AMCG00011983 mRNA downstream 1341 7856425 ~ 7870202 (-) True AMCG00011983
AMCG00011984 mRNA downstream 30194 7831304 ~ 7841349 (-) True AMCG00011984
AMCG00011978 mRNA downstream 92781 7737448 ~ 7778762 (-) True AMCG00011978
AMCG00011974 mRNA downstream 195312 7651556 ~ 7676231 (-) True AMCG00011974
AMCG00011973 mRNA downstream 271781 7577314 ~ 7599762 (-) True AMCG00011973
AMCG00011989 mRNA upstream 11221 7885579 ~ 7898610 (-) True AMCG00011989
AMCG00011991 mRNA upstream 26967 7901325 ~ 7901609 (-) True AMCG00011991
AMCG00011988 mRNA upstream 33017 7907375 ~ 7910654 (-) True AMCG00011988
AMCG00011990 mRNA upstream 42553 7916911 ~ 7918515 (-) True AMCG00011990
AMCG00011995 mRNA upstream 182857 8057215 ~ 8059833 (-) True AMCG00011995
TU167732 other downstream 314835 7545355 ~ 7556708 (-) True G133715
TU167719 other downstream 321891 7509749 ~ 7549652 (-) True G133712
TU167720 other downstream 321891 7509749 ~ 7549652 (-) False G133712
TU167712 other downstream 326438 7543575 ~ 7545105 (-) False G133712
TU167722 other downstream 375910 7492870 ~ 7495633 (-) True G133713
TU168124 other upstream 614842 8489200 ~ 8565264 (-) True G134005
TU168169 other upstream 825053 8699411 ~ 8701641 (-) True G134036
TU168269 other upstream 1266466 9140824 ~ 9145295 (-) True G134119
TU168464 other upstream 1660910 9535268 ~ 9538892 (-) True G134244
TU168522 other upstream 1738552 9612910 ~ 9625601 (-) False AMCG00012058

Expression Profile