RNA id: AMCG00011985


Basic Information

Item Value
RNA id AMCG00011985
length 6650
RNA type mRNA
GC content 0.62
exon number 26
gene id AMCG00011985
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7931795 ~ 7955013 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGAGTTATAatacctctctctttctctctatgtTGCGCTTTTGGGGGATATAGGAACAGCCGCGATACACGCAAGAAGCGCAGGAGCGAGAGAGGACAGCAGAAAAGAGCAATACACCACAGAGACGGCGAGGAAGAGAAGAGGGGATACACAGCAAGAAAGgggaataaagaaaaagaagagtgAAAGAGGAACGACAGAGGAAGCCGGAGGAGGATGTAGCCGGACCGGCAGCGAGACTCGTCCGATGGGCTCCGAGGCGGTGGAGGACTGCGTGCAGGGGGCGCTGTCCTCCCTGTACCCCCCGTTCGAGGCCACGGCGCCCCCCCTGCTGGGCCAGGTGTTCTCGGTGCTGGAGGGCACCTACCGGCATGACGCCCTGCGCTACCTACTGGACTATTTCATCCCCGCCAAGCACCTGCTCCACCGGCTGCAGCAACAGGCCTGTTCCCAGTATGTGGGCTGCCTGTTTGTCCACGCCGGCTGGCCGCTGTGCTTGGGCGAGAAGGTGGTGGTGCAGCTGTCCACGCTGGACTGGCACTTGCTGGGGCCGCGTGACTTCTACCTGCAGGTGGTGCCCTTCTCTGCCCGTTGCCCCCGCCTCGCCCTCAAGTGCCTGTCCGCGGGGGGGCGCACTGTTCAAGAGATCCTCATCCCAGAGTCCCAGCACACCCACGTGTTCACCCCTGAGTGGCTGAACGGCATCAAcaaggagagaggaggaggaggaggagagaggaggctgGAGATGTGCTTGGTCACCACTGGTGAGGGATTGGTCCGACTCCCCTGGCGGGACATCGTGTACCCCAGGTTCGTGCTCGAGCCGGGATGTCCCGCGGACGGGGGGTCTCCCCGGAGTTCCCCTGTGTTCCAGGGGGAAGATGATCCCAAAGGATTTCGCCCTGCTCCTGGAGACTGGGACCCAGAAGTCCACACCCTGCCACAGACCGCCAGGGAACTGGAGGATGGACATGGGAAtgtggaggaggatgaggatgaggataAAGAGGGCTACTGGACCCCCCCAAGCCCAGGCAAGGACCCCTGGCCTCTGgagaaggagctggaggaggcagGAGGGGAGTATGTGGAGCTTCTGGACTTCAGGAGTATCCCAGACCACAGAGCAGAATTAGAGGGGCAGGATATGAAGCAGAGGTATCTGGAGATGCACGGGATCAGCAAGACCAAGACCGTCCCCCTGCTGAAGAAGGGGAAGCTGGCCAAGGGCAAGAGGGGCAAGGCCTGGCTGCATTGCAGGAGTGACTCTAAGAgaacctcctcctcctcttcctcctcctcctccttttcacCCTCATCCTTTTCTACCTCCTCGTCCACCTCTTCTGCcatctcttcttcctcctcttcctcctcctgctccaggAAGGGGAAAGGAAAGGGGGTGGAGGATTTGAGGCTGTCCGGGGAAGAATTCCTATCCCGGCCCATCCCGAATGTCATTGACCTTCCCAGGAATTCAGATCCAGATCGCTACATTCGGGTCCTGGCCCAGGAGAGGCCCGTGGGACTGTCGCCTTGGGCACCTGTGGGTGTCCCTGAAGGGGAGGTGGAGACTGGGTCAGAGAGGGCAGCCCAGGAAAGAGCCAGAGACAGGAAGGGGAAGTCAGGGGGTGGGTGCCAAATCGGCAACCAGTCAGCGAGCCGGGGTTGGGACCAGGAGACCAATGGCGAGGCAGGAATAGCCTGCAAGGACCAATCAGAGGATCTCAGTGGACAGGCCCCTAACCAGTCCTCCGACTCCAGAAAGGGATCCAACGGGGAGCTCAGCCAAAGAGAACGGGATCCTGAGAGCCAATTGGTTGTCCACACTGGATCCCCACAGCCACCACTGGCCCGGGAAGGGGATCCCCCCCCGAGATCGTTAGGGAGCCAGGATGATGTCACCGCAGATGACTCGGCCCACTCCCCCTGCCCCGATCACTCGACGCAGACTGCCCCGCTCCGGCCCTGCCCAAAGCCAGGAGACCGGCCTTGCCCTGCGGCGCCTGGGTCTAACCCCAAGCAGAACCCAGGTCAGACGAGCGTGAGTCAGTGTGAATCTGGGCTGAACCGGGGACAGGAGGACCCAGGGGCGGGGCATGCTGGGAAGAGGGAGGACAAAGCCACCCCCCCCAGAGCCAAGGATGTGAGGGCAGCTGGAGTGAGAGCAAACAGgaggaggaggaaggcgAGAGGTGGGAAAGGGAAAGCCAAGCCGGTGGTGCAGCAGCCAGGGAGGGCTGCTCAGAGGGAGCAGGTGGTCAAGGAGAAATCCTCCCCCCACCTTATCCCTGAGTCCGAGATGCCACCCTTCTCCTCCTCCGTGTGCGCCCCGCAGCAAGGGCTCGAAGGTCATGCCCCCGACACCAcagcagcctctctctctgttggcCAATCAGAGCAGGCCTGGACTCACGCAGATGGCGGTCAAGGGTCGCAGCCAgccaatgagggggcccagcaGGCGGGACTGGACAGGACAAGTACAGGGCAGGATGGGCAGGCCAGGACTGCAGACCAATCTGAAACCCCGCCCATCCAAGCCGACAGCCAATCGCAGGTGGTGTGTGCTGACCACGCCCCCGAGGAAGCGGAGCCAGCCGGGCTTCCTGACCAGTCATCGGCTTCCTCCTGTCAGACTCCTCTGCTCCTGCGCGACCTGAACCCTGCGCTGCTCCAATCCGGGCTGCTGACTCTCCCAGGCACTATGGACAAGGCAGGGCGGGCCGTTGTTGTCATGGAAATGCGGAGTCCTAACTGCAGCTACCGTGACGACGAGATCGCCCAAACCTTGGCCTGTCTCTATGGCCTCACGAGCTGCCCAGCCCGTCAGCAAGGACTGGCCATGATAGTGGACTGTCGTCAGGCCTCCCCCTTAACGCTTCCCCTGGGGGCTCTGACGGCTTATCAGGAGAGGGTGCCCGGCGGCCTGGGCTCTGTGCTGTTCCTGGTGGCGTCAGACTCGGAGGAGAGCGCGGTCCCCGGCATCCCTGGCACAGAGGCCCAGCTGGTTAGAGGCATCCGGTCTCTGCAGAGCCACGTCGACTCGGAGCAGCTACCAGTCAACCTGGGGGGCACCTGTGCCCACAGCCACGCGGTCTGGCTCTCCTACAGACTGAGGCTGGAATCCTTCAGCCAGTGCTGTGAGAGCGCCCTCTGCCTGCTGGGGGAGACACTGCATGCCCTGGAGACAGAGCCCCTGCCAGCCAACAACCAGgctgtGCCGGGTAGCATGCAGAGTCACCAGCAGCTCATGGCGAGTGTTCTGGCAGACGAACGGCTAACCCTGGTGCAGAGGGAGGGTGGGGCCATGTTGGCACGCCTCCGCAAAGAGGTGGAGCTTCCCCAGCTGTCCCCTGACTGCAGTGTGGACGACTCTCTTCACCTATTGGTCCGCGTGTCCAACCAGAGGGGCCGTGACTTGGAAGCACTTAGCCGGCTGGCCACTCTAGAGGAGAAACTGGACAAGTGTGAGTGCTGGCTGGGGGAGGCTGAGCAGTTGGTCCGTGGGTTCAGGGATCTGGGCGACTGTCTGGAGCTCCTGTCCCACAAGAGCCAGGAGTTCAAACTCTTCAGCCAGACAACCATGGAGCGCTGCAGGGAGGCCTGCGAGATGCTGTCTGAGCTGGAGGGCAGTGGGGCCGGCGCAGGGGCTCCAGGGAGCCCGGGGGGGGTGGCACGAGCAGAGGGACGTGGCCCTGCCCTGAGGGAGCGACTGCGCAGCCTCACTGACACGCTGGAGGTCTGTGGTACCCAACTGGACAAGAGGCTGAGACTGCAGTCCACTCTGAGTGAGGCCCCCCCGgccctctgcctctccccctcGGGCTGTGGCCACGCCCTCTCCGTCCTCCAGCACTGCTGCGGCGACCTCCCGGAGATCCCCGCCTCCCGTTTCCGTGATGCCCGCGCCCTGGCCCTGGAGCTGGGCGGAGAGGGAGGAGTCAGGGAAGTGGAGGGAGGGTCCCTGTTCGAGCGCTGGGCGTCGGTGCGAGCGCGCTACGACCAGACCCTGTCCGCCCTGAGGGAGCGCCTCCTCCTGGCGCAGCACTGCCAGCGCGCCAAGCTCAGCTCCACCCCCTCGCAGAGCATGAGCGACCTGTCCGCGGACTGGACCACCTCCCTCGCCAACAGGGGCCGGGACTCGGAGACGGGGGGCTCGGAGACAGGCGGGGGGGGAGGTGTGGGGACGGTCCTGCAAAGCTGGGGGTCCCTGGCCTCCCTCCTCCTGCTGCCCACCCCCAACAGCAGCAGCGCCACGCTGCGGGTAGAGGAGCTGgcggagagagggaaggggaggaTGGGAGGCGGAGGAGCGGCAAAAGACCCCAACAGTCCCCCCGCCACCAGCGCCCAGTCTAATAGCAGCCCGCCTTCTCGCTTCCTACAGGCTCTGCTGCACCCCTCCAAGAAAACACCCCCAGACCCTCCGGCCTCAGTGAAGCCGGTTCGCAAAAGGAACCCCAGCTTTGACCTCTCCGCCCTGCTGGCTCCTCGCCGGGCCTCCAAGGACCCGGGTGCGAGGGTGGGGCCCGAGGGGGCAGTAGCCCGGGGGTCCCCCTTATCCTGGCTGGGGCGTCGAGCGGCCGACACGCCCCCCTTCATTACCACCCCCCCCAGCACCCCCGCTGTCCTGGGACaggcaggagggggaggggttctGATCAGGGGTCTGGAGGTCAGCAGCAGGGAGGTGGTGGACCAGACAGGGTCGCCACGGCAACACGTCCTGCTGGGGAGGAGCGACAGGGAGACAGCTGCACTGGACAGACATGTCGCGTACAGTAAGGCGTTCCAGCTGTGGTCCGGGTTGCTGAGTTCGGAGCGGGAGTACGTGGGCATGCTGCGGGGGGTGCAGGAGGGGTACATGACTCTGATGGATGCCCCTGACCTGCCCCTCCACCTCCGGGGCAAAAAGTCGGCCCTCTTCAGCAACTGGGAGGAGTTGACCGCCTTCCACTCGCAGTACCTCCTCCCTGCCATAGAGGGCACTGGTACCCAGCCCCAGCGCCTGGCTGAGTGCTTCCTCAAATATaAGGAGCAATTCCTGCTGTACTCTCTGTACATGAAGGCCCAGCCAGACCTGGACTGTCCGCTGGTCAGCCAGGCGTCAGAGTATCTGAAGCTCAGGCAGCAGGCGCTGGGGTGCCCGCCGCCCCCTGCTCCCCTGCCCAGCTGTCTCCAGGCCCCACTGGATCAACTGAAGCGGTACTGCGAGCTCCTGGAGCAGCTGGTGGCGCTGGGCCCCCCCCATGCCCCGCTCACTGCAGCCCCCACCCTCGCCGTGCTCACCCGCGCTCAGCGCCACGGCCACGACCTGCGCGCCAGCACCCACATCACCGGCTGCCCGGTGGACCTTTCCCAGCAGGGGGAGCTGCTGAGGCAGGAGCAGCTGGAggtgtgggggggcaggaaGAGGCGGGGCCTGCGCCAGGTGTTCCTGTACCACCAGCTGCTGCTCTTCACCAAGAGGAAGACGCCCCAGCCCGGCCACCACGTGTTCGCCTACAAAAACGCCATCAAGGCGGGCGGGGGGCCCTGTTTCTCAGTGTGGGTGCGGGGCGGGGGGCAGCGGGACACCCTGACTTTGCAGGCCCCCAGCGAGGAGAGCCGGGCAGCCTGGACACTGCATCTGGCCTTGATCCTGGGGGGCCACGCCCTCACCAACGATGagaTGTGTCTGAAGGAGTCTCTGTGTATGGGCGTCTCCAGTCAGCTCCTCCTAGACCTGCAGAGGGGGGCCGGCGGCCACAGCGACCGCGACCTCAACTACATCCTGCTTCGGGGAGCAGGGTCCCGTACTGATGCCCCCCCGCTGAGACCCCTGTCCCTGGACCTGCACTGCCCTGGGGAGGATGACTTCCTGGGCAGCTCGGACTCCTCCTCCACAGGGAGTGGTCTGAGCCAGAAGGACCTGGAGTCGCCGGGCTCACGGAAGGTCACGTCAAAATGGCCGGGCCAGAGCTCCGCCCCCTTCGGCccggggtcagagAGTTTCTCGCCCTCCACTGCTGTCTGACCATCATCTCATTTTCTGCGAAACTGGAAGCTGAGATCTGTCTCTGGAGGAAGGAACCTGCTATGACCTTTTATTGTGCCTGTTCTCCCTCTGGACACAATGGGCCGGGCCAGGAAAGGGTCTCTGCAAGAGCAaagaggatgagagagagaggaagagagagagaacagtgtAACTCTCAGTAATGAACGCACGGCGGTGGAGCAGggagacacagtgagagagcACAGGTGTCATTAATCAGGGTATTAATCTCTCTACTCTTTGCCAACGGAAAACCCAGCGCTTCTTTCATATCCAGGTGCGCAGGACTTAATGAGGCACAACTGCAGGCTTCACCCCCACTCCAAAGAGGGTCTTTGAATATTATGGTCTTTAAGTTTTCTGGTATTGTATTATAGTGATAATGACGCTGATATTAATATCGTTATTGCGATTGATCATGATAtgaatgattaaaaatgaataatcaaaTTTGTCATAAGGGGTTTTAAACAATTGTGCCTGTATGTACATTGCTCTATATCTGCCGGCGTTATACATACTCTGTACACAGACGTTACTGAATGAATGTTGAGTACAATCAGAATATTCTATGCAAATATAAGTATTTAAGATTCTT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0033692 cellular polysaccharide biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0034637 cellular carbohydrate biosynthetic process biological_process
GO:0008653 lipopolysaccharide metabolic process biological_process
GO:0000271 polysaccharide biosynthetic process biological_process
GO:0016051 carbohydrate biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167857 lncRNA upstream 5569 7925136 ~ 7926226 (+) False AMCG00011987
TU167816 lncRNA upstream 88324 7830564 ~ 7843471 (+) True G133783
TU167649 lncRNA upstream 356630 7551295 ~ 7575165 (+) True G133665
TU167674 lncRNA upstream 375083 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA upstream 384040 7546644 ~ 7547755 (+) True G133682
TU167871 lncRNA downstream 47767 8002780 ~ 8003512 (+) True G133820
TU167877 lncRNA downstream 107580 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA downstream 124742 8079755 ~ 8100437 (+) True G133832
TU167885 lncRNA downstream 165886 8120899 ~ 8124699 (+) True G133833
TU168009 lncRNA downstream 241806 8196819 ~ 8197029 (+) True G133921
AMCG00011987 mRNA upstream 3557 7925593 ~ 7928238 (+) True AMCG00011987
AMCG00011980 mRNA upstream 47534 7878175 ~ 7884261 (+) True AMCG00011980
AMCG00011981 mRNA upstream 111403 7816096 ~ 7820392 (+) True AMCG00011981
AMCG00011979 mRNA upstream 128715 7791013 ~ 7803080 (+) True AMCG00011979
AMCG00011975 mRNA upstream 143070 7785850 ~ 7788725 (+) True AMCG00011975
AMCG00011986 mRNA downstream 15444 7970457 ~ 7976097 (+) True AMCG00011986
AMCG00011992 mRNA downstream 44215 7999228 ~ 8016887 (+) True AMCG00011992
AMCG00011994 mRNA downstream 65791 8020804 ~ 8025061 (+) True AMCG00011994
AMCG00011993 mRNA downstream 74473 8029486 ~ 8037681 (+) True AMCG00011993
AMCG00012006 mRNA downstream 423320 8378333 ~ 8397041 (+) True AMCG00012006
TU167660 other upstream 365449 7565387 ~ 7566346 (+) False AMCG00011971
TU167659 other upstream 365767 7564808 ~ 7566028 (+) False AMCG00011971
TU167656 other upstream 423044 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 689495 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 1373310 6545388 ~ 6558485 (+) False AMCG00011909
TU167842 other downstream 5685 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 73050 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 97111 8052124 ~ 8055021 (+) True G133822
TU168052 other downstream 428100 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 563001 8518014 ~ 8519026 (+) False AMCG00012008

Expression Profile