RNA id: AMCG00011986


Basic Information

Item Value
RNA id AMCG00011986
length 4161
RNA type mRNA
GC content 0.68
exon number 4
gene id AMCG00011986
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7960698 ~ 7976097 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGAGGCGGCCTGGGAGACTGGACACAGCACCACAACTCTGCACCGCGCCTCTCACTGCTGGACAGCGAGTCTGGAGCATGGGACACACCCCCCACTGaaAATGGAATCGCCCATGGAGTGTGTCCCGGCTCTCTCTGAGCACCCCgttgcctcccctccccctccaccatCCCCTGATCGCTGCCTCCAAGAACCTGACTCGCCCTTGCCCTCCCCCACTCCGTTCCCTGGGTACCCTCTCTCCCCCGGCATCTCCCCCTTCCCccaacaagaagaagaagaagaagaagaaatagaagAGAATGatgaacaagaagaagaagaagacgaagaagaggaggaagaagaagaagaagaggcgatggaggaggaggaggaagaggaggtgtCTGTCCCTCCTTCCCCGACTCCGGCCGTCCCCGTCTTCCCTGGGGGGCAGGACACTGCCAGTCCGGCCGCGGAGGAGGAGACCCCACCAGACGCCCCGGACCCCCCAGCCCCCCTCCCTCTGGCTCTGCCCCAGTGCCCCCGCAGTCCCTCCCCCGCCCCGGACAGGACAGTGGGGTTTGGGTTCGGGGCCCTGGAGGCGGCCCTCTCCGCGGAACACGACGGCAGCCTGACCGACGAGCTGGACCTGCAGCTGTTCCACAACGGACGACGGACTGGGGGGGGCGCAGGAAATGATGCAGGGGGGGGTGAGGCTGGCGGTGGCAGCGGAGGGGGGGGGCGCCGTTTCCCCTGCAAGGTGTGCGGCAAGCGCTTCCGCTTCAACAGCATCCTGTCCCTGCACGCCCGCACCCACGCCGCTGGCCGCAGCCTGCTCTGCCCCTACTGCGGCCACCGCTCCTCCAACAGGGCCGGCTTCAGCCTGCACCTCCAGTCACACCAGGGCACCAGAGAGGGAGCGGGTGCGGGAGCCGATGCTGTGGCAGATATCCCCCCGGAGCAGAAACCCAGCTTCCTATTCCTGCTGCCACctgaaaagcagcagcagcagcagcagcagcggaaGCGTCGTCTGCAGTGCGGAGCGTCGCTCACAGACACAGCCCCGCCCTCCAAGTCTCCTCCTCGCCGCTCCCGCTCCAGCCAGACCCCGCCCCCAATTCCCAAACCTCCCCCCTCAGCCCGATCCACGTTCGCCGAGCTCCTGGCCGCTCCGCTCCACTCCGAAACCACTCCACCGCCTCAGACCCCTCCACCCACACCCCGCCCCTCCAGACAGGCCCCGCCCCCCGGGTTCCGCTGCCACGCCTGCAAGGGGAAGTTCCGCACGGCCCCGGAGCTCTCGCGCCACGTGAGGATCCTGCACAACCCCTACCGCTGCTCCCTGTGCCCCTTCTCCGCCAGCCTGGAGGACCAGCTGGCGGCCCACCTGCAGGGCGAGCACCACCTCTCGctgtcttcctcctcctcctcctcctccccatccTCCCCCGACGCCGAGCCCTCTTCGGCCGCTGCTTCCGAAGCCCCtcttctccccttcctccagccCACCTCCCCTACCCCGACTCAGACTCCTCCTCCGCCtgcccctccaccccctcccctggCACCTCCACCTCCGGCGTTTCGCTGCGAAACCTGCGGCCAACGCTTCACCCAGTCCTGGTTCCTGAAGGGGCACATGCGCAAGCACAAGGACTCGCTGGACCACAAGTGCCAGGTGTGCGGACGTGGGTTCAAGGAGCCCTGGTTCCTGAAGAACCATATGAAGGTGCACCTCAACAAACTGGGCCTCAAGGCTGGCTTGGTGACTGGcggggccggggccggggcTGGGGCAGGCGGGGGCGGCAGTGGCGGAGGTGCGGGAACCAGCGACCCAGGAAAGCTCCTGCAGAACCAGGCGTTTGGGGCCCTGTACTCCGGACTCCTGCTGGCCCGGGCTGGGggagcggagagagagagggagagggagcgggaggCCCTTGGGAAGCTGCTGGGCGCCGGGGTGGCTGAATGCAGTGGCGGAAGTGGCAGCGGAGGTGGCGTTGGGGTCAGCAAGGCCTCCATTTTGGGGTACCTGGGCCTGCCGGGGGAGACGGGGGGAGGCAGTTGCGTGGAGAGGCTGCAAGCGGCCGCCCATCAGGTGGCTGAGATGGGGGGAGGAGAAAGGGGAGcaacaggaggaggaggtggtagtggaagtggaggaggaggcggagggaACCAGGCAGCCGTTTGGCATCTGGTAGCCCGGAGTCTGGTAGCTGCCCAGCAGGCCcaccaacagcagcagcagcaacatcatcagcagcagcagcagcagcgacaGAAGATGCAGAAGAAGAGTTCGGTAGCCGGGGAGGCCGAGCAGGTGCGGGCCTACCTGGGAGGCCTGATGGCCGGGGAGGAGGCGGCGGCGGCAGTGACGGCCACGGCCCCCTGGGAGTGCCCTGACTGCGGGAAGCTCTTCCGCACCCTGCAGCAGGCGGTGGCCCACGCCCGCGTACATGTGCAGCGGCCGCCCAAgaacagaggaggagggggaggaggaggtggcgGAGGAaggggtggtggaggaggaggaggaggaggaggaggcggtggagaggagggagaggaaggaaaGAAGAGCAGGGGAGGAGCACGGCTGGAGTACGGGGGCCAGGCGCTGCAGGAGAGAGGAggcggcggaggaggaggaggaggagggggaggaggacgttcaggaggaggaggagggaagaTTGCAGGAGCATCAGGAGGATACCACACAGCCCTGCCTCACTTTCAAGGTGAGAATGGCTTCAGGGGGGTGTCGTCGGCTCCATCCTCGGCCCTGAGGGAGCGCGTGCGGGGCACAGGAGGGAAGGACTGCCCCTACTGCGGGAAAACCTTCCGCTCCTCCCACCACCTGAAGGTTCACCTGCGAGTCCACACAGGAGAGAGGCCCTACAAGTGCCCGCACTGCGACTACGCCGGCACTCAGTCTGGCTCCCTGAAGTACCATCTCCAACGGCACCACCGAGAGCAGCGCAGCGCCGCCGCCGCCAAGGCTGGGGTCCCGGATGGCCGCGTCTCTCCGGGGGAACTGGCCTCCACCCGGACGCGTCCCTCCTCCCAGGCTCACCACGGCTCCTTCGGGAGGCTGGATCTGGCAGGAGGCAGCGGGGGAGGGGGCTCGTGTTCGGGCGGAGAGTCCCCCCGCAGCAGCAGCCTGtccccccagcagcagcagcagcaacagcagtcCTGGCAGTTGGGGTCCCGCGAGCGCCGGAAGAGGAAGCAGATCCAGCGTGGCCTGTCCCTCGGAGAGCAGGAGGGGTTCCGCTTCCTGGGGCTGGCGGAGATGgagagaggtggaggaggaggcggcgggGGGGCGGGGAGTGGGGGGCTGGATGGAGCCAGGGGAGCCGTGTTCCCGGGATTCCCGCTGTGGCCCAGTGGAGCGTCCCGCGCCAGGCTGCCCAAAACATCCCGCCGCAAACCGCTCACCACCAGCAGGCTGCTGCCGGCCACCCAAGCCAACGGTAGGCGGGCCGGGGCTGGAGCAGGAGGGGAGCGCTTTGAACCCCTGGACCTGTCCCGTCGCACCCCCCAGGACTCGCCCGGGGGGGGAGAGGATGGCGTGACCCTGCACCAGTGCCTGTTCTGCCCCTTCCGCACCTCCTCGGCCGAGCTCATGGCCATGCACATGCAGGTCAACCACACCAGCAAGTCCCGACGCAAGGACCGCGGGCGTTACATGGGGTCAGCATCGGCAGCCGCCCACGCTGAGGCGCTCTCCTGGGGGGGCCACCGCGACCTGGGCGACAGCCTTCTCCTAAGCACATGGAAGTCCCCGGTGGATGGGGGGTCTCCGCTGTCTGAGACGGTAGGGGAGGGGCGCAAAGTCAACGGGATGCTCCAGGAGGAGGCATTGGTGAAGGTCACCCCCGaccacacagagagggagggaacaACCCGGAGGTCCCCAGGAATGGAGTGCggggaagaggaaggagaggaggaaggagaggaagaggaggaagaggaggaggaggaggaagaggaagaagaagatgaggaggcttgcagcagcagcagcccttGCGCGGAATCCCTATCGCGCCCCGGCGAAAGCCCTGCCCCAGCTGCGCCGACCCCCCAGTCTCCCACCCTGTGTTCCGAAGTGTCCCCCTCCTCCGCCAGGGAGGACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167857 lncRNA upstream 44231 7925136 ~ 7926226 (+) False AMCG00011987
TU167816 lncRNA upstream 126986 7830564 ~ 7843471 (+) True G133783
TU167649 lncRNA upstream 395292 7551295 ~ 7575165 (+) True G133665
TU167674 lncRNA upstream 413745 7545283 ~ 7556712 (+) True G133681
TU167871 lncRNA downstream 26683 8002780 ~ 8003512 (+) True G133820
TU167877 lncRNA downstream 86496 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA downstream 103658 8079755 ~ 8100437 (+) True G133832
TU167885 lncRNA downstream 144802 8120899 ~ 8124699 (+) True G133833
TU168009 lncRNA downstream 220722 8196819 ~ 8197029 (+) True G133921
AMCG00011985 mRNA upstream 15444 7931795 ~ 7955013 (+) True AMCG00011985
AMCG00011987 mRNA upstream 42219 7925593 ~ 7928238 (+) True AMCG00011987
AMCG00011980 mRNA upstream 86196 7878175 ~ 7884261 (+) True AMCG00011980
AMCG00011981 mRNA upstream 150065 7816096 ~ 7820392 (+) True AMCG00011981
AMCG00011979 mRNA upstream 167377 7791013 ~ 7803080 (+) True AMCG00011979
AMCG00011992 mRNA downstream 23131 7999228 ~ 8016887 (+) True AMCG00011992
AMCG00011994 mRNA downstream 44707 8020804 ~ 8025061 (+) True AMCG00011994
AMCG00011993 mRNA downstream 53389 8029486 ~ 8037681 (+) True AMCG00011993
AMCG00012006 mRNA downstream 402236 8378333 ~ 8397041 (+) True AMCG00012006
AMCG00012005 mRNA downstream 421929 8398026 ~ 8401203 (+) True AMCG00012005
TU167660 other upstream 404111 7565387 ~ 7566346 (+) False AMCG00011971
TU167659 other upstream 404429 7564808 ~ 7566028 (+) False AMCG00011971
TU167656 other upstream 461706 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 728157 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 1411972 6545388 ~ 6558485 (+) False AMCG00011909
TU167865 other downstream 51966 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 76027 8052124 ~ 8055021 (+) True G133822
TU168052 other downstream 407016 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 541917 8518014 ~ 8519026 (+) False AMCG00012008
TU168082 other downstream 584945 8561042 ~ 8563214 (+) True G133974

Expression Profile