RNA id: TU167857



Basic Information


Item Value
RNA id TU167857
length 572
lncRNA type sense_over
GC content 0.48
exon number 2
gene id AMCG00011987
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7925136 ~ 7928238 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gattgtaggGATGTGTGGCTTCTGTATTCTTGTCAGACTGGTTCCTGTCATCGAGGGGAGAACAAGGCAGACAGAGAGGTGtgagagatagacagatattGATAGACAGAGAGTCAGAcaagttaaaataaagtaaatagtggaagaaaagagagagagaaaggagaaaggaagagggagaggaagaaaaagagggacaaaataaagacggaaagaaaataaaaaattgaaggAAAGACAAGCAAAAGATGAGGAGACAGAAGAACGCATTGTTAGACAGGTTTAGAGACAGAGTCAGTCAGACTGACAGATAAACAGGCAGGAAGTGAAAGggatagacagagacagacagtcagacagaggcacagtgagacacagagacactgtcgGACTCTGGACACAGTCCTGGGCAGCGCTGTGACAGAGGGAGCTGCTCCACCCAGGGACTGAGACAGCCATGcagaaCGGTGCAGCAGGATCAGGCCAGACAGGCAAGGGACAGGTGagtctgagagagacagagcacaGATGCATCCTGTACCGCCTCTCTCGCACGGCACTGAAACTCACAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167816 lncRNA upstream 81665 7830564 ~ 7843471 (+) True G133783
TU167649 lncRNA upstream 349971 7551295 ~ 7575165 (+) True G133665
TU167674 lncRNA upstream 368424 7545283 ~ 7556712 (+) True G133681
TU167675 lncRNA upstream 377381 7546644 ~ 7547755 (+) True G133682
TU167661 lncRNA upstream 405842 7509749 ~ 7519294 (+) True G133669
TU167871 lncRNA downstream 76554 8002780 ~ 8003512 (+) True G133820
TU167877 lncRNA downstream 136367 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA downstream 153529 8079755 ~ 8100437 (+) True G133832
TU167885 lncRNA downstream 194673 8120899 ~ 8124699 (+) True G133833
TU168009 lncRNA downstream 270593 8196819 ~ 8197029 (+) True G133921
AMCG00011980 mRNA upstream 40875 7878175 ~ 7884261 (+) True AMCG00011980
AMCG00011981 mRNA upstream 104744 7816096 ~ 7820392 (+) True AMCG00011981
AMCG00011979 mRNA upstream 122056 7791013 ~ 7803080 (+) True AMCG00011979
AMCG00011975 mRNA upstream 136411 7785850 ~ 7788725 (+) True AMCG00011975
AMCG00011976 mRNA upstream 142145 7779226 ~ 7782991 (+) True AMCG00011976
AMCG00011985 mRNA downstream 5569 7931795 ~ 7955013 (+) True AMCG00011985
AMCG00011986 mRNA downstream 44231 7970457 ~ 7976097 (+) True AMCG00011986
AMCG00011992 mRNA downstream 73002 7999228 ~ 8016887 (+) True AMCG00011992
AMCG00011994 mRNA downstream 94578 8020804 ~ 8025061 (+) True AMCG00011994
AMCG00011993 mRNA downstream 103260 8029486 ~ 8037681 (+) True AMCG00011993
TU167660 other upstream 358790 7565387 ~ 7566346 (+) False AMCG00011971
TU167659 other upstream 359108 7564808 ~ 7566028 (+) False AMCG00011971
TU167656 other upstream 416385 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 682836 7236941 ~ 7242300 (+) True G133619
TU167225 other upstream 1366651 6545388 ~ 6558485 (+) False AMCG00011909
TU167842 other downstream 34472 7960698 ~ 7970918 (+) False AMCG00011986
TU167865 other downstream 101837 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 125898 8052124 ~ 8055021 (+) True G133822
TU168052 other downstream 456887 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 591788 8518014 ~ 8519026 (+) False AMCG00012008

Expression Profile