RNA id: AMCG00011992


Basic Information

Item Value
RNA id AMCG00011992
length 2009
RNA type mRNA
GC content 0.53
exon number 16
gene id AMCG00011992
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 7999228 ~ 8016887 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCCCAAGCCCATCGACTCCTCCAAGATGACTCCAGCAGACTGGGAAAATATTGCCCACAAGATCCTGGACCAGGACAAGAAAGGCTTCGATGGCTTTGTCATCCTCCACGGGACCGACACCCTGGCCTACACCTCCTCAGCTCTGTCCTTCCTGCTGCAGGGACTGAACAAGCCTGTGGTGGTGACTGGGGCACAGAGGTCTCTGTTTGAGCCGCGCTCTGATGCCGTCAGCAACATCCTGGGCTCTCTGCTGATCGCCGGCTGCTACAGCAAGAACCCCGCGCTGCAGCAGgtgtccGTGTTCTTTGACAACAAGCTTTTCCAGGGGAACCGAGTCCAAAAGCTTGACTGTGATGCCTTTGATGCCTTTGACTCCCCCAACATGGAGCCACTGGTGGAGGTCGGGCTGGACATAAAGGtgAATGCCCGCCAGCATGAGATTCCCACTCTGCCGGTCTTGGAAAAGACCAATGCTGAGCCTGACATCAGAATCCTGCGCATCTTCCCAGGCATCAACAATTTGACGCGCTTTGACCGTGACGATGTGCAGCCGCAGCTGAAGCGCGATGCTCTGGGGGctctgtgtgtttcaggagAGCATCCGGGGAAACCAGGAGAATTCACAGAGGAGCTCCAAAGGCACCCTGAGCTCTACAGCAAGAAGGACAATGGGTGGTTCCTTCTGCCGCCAAAAGCATTTGATGAGTGTGGAGAATTTGCCTCAGTGAAGTACCAGGTGGAGGAGGACCAGGATAAGAAAGGCTTCGATGGCTTTGTCATCCTCCACGGGACCGACACCCTGGCCTACACCTCCTCAGCTCTGTCCTTCCTGCTGCAGGGACTGAACAAGCCTGTGGTGGTGACTGGGGCACAGgtgTGCGTGTTCTTTCACAACAAGCTCTTCCAGGGGAACCGAGTCCAAAAATCTGACTGTGATGCCTTTGACGCCTTCGACTCCCCCAACATGGAGCCGCTGGCTGTGTTTGGTCCGACTATAAAGGtgAAGCTGCCCTTCGGGTTCAAAAAGACCAGTGCCATTGCTAAGCCATCACTGAAACAGTCCAAGTCTGCTCTGTGTATTGCAGTGGATACCTCCCAGCCTGTGCTGCTGTTCCCCCTCAAAAAGAGATGTGACAAGATGCCTGTCACCAGAGTCTTACGCATCTTCCCAGGGATCACCAAGTCCTGCGTGGACAACTTCCTGGCCTCGGCTGACGGGATCGTCCTGGagacgtatggaaatggcaaTGCCCCTGATGAGGACTGGTTCTCTGAGGCCCTGAAACGCGCAACAGACCACAACGTTCTCATCATCAACTGCACGCAGGTCCACCGGGGCTCTGTCAGACCCGTCTACGAGGCCGGAGATtggcTGAAGAAGGCTGGGGTGCTGTCTGGGTATGACATCACCACTGAAGCGGCTCTGACCAAGATGTACTGGGTCCTGCAGCACTTTGAGAGCGAGGAAAGCAAACAGGTGATGCAGATGAGTGTCTGTGGGGAGATGACCATTATCCCAGAGTcttcagtgaaaaacaaagtgCACATTGTTGCCTCCCACTGGGCTCCAGAGAAAGGATGGACAGCCTCtCGCAATGGCTGTGAGGATGCTGGCCCTGCCTGGTGTTGCCTACCGTTTTTCCATCCAGTTATCCCCTCACCAAGGCCAGGACTGCACAGGCCCTGACCACCTTCCGTCGATAACTCAAGAttactgtaatacagcagcctattCTGCTGTGCTGCTCAGCACTCCGGCTattatgcactttattaaaTTATGCCTCCTTATGCTCTCTTGTActaatgtacaaaatgtactaAAGTActaatgtattgttagcacttctttACAATAATGTCAACATCAAAATAAAGCCTGCACACTCTATGGATGCCTCTCTCTTCTCTCGGTGTGTGTTATATTATCACACTGTCTGTCACTGGGTAGAGGCGAGGCAATGCATAGTCTGGCAGGAAGTCACAGTCCTGGAGTGGCAGTCTGGG

Function

GO: NA

KEGG:

id description
K01424 E3.5.1.1, ansA, ansB; L-asparaginase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167857 lncRNA upstream 73002 7925136 ~ 7926226 (+) False AMCG00011987
TU167816 lncRNA upstream 155757 7830564 ~ 7843471 (+) True G133783
TU167649 lncRNA upstream 424063 7551295 ~ 7575165 (+) True G133665
TU167674 lncRNA upstream 442516 7545283 ~ 7556712 (+) True G133681
TU167877 lncRNA downstream 45706 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA downstream 62868 8079755 ~ 8100437 (+) True G133832
TU167885 lncRNA downstream 104012 8120899 ~ 8124699 (+) True G133833
TU168009 lncRNA downstream 179932 8196819 ~ 8197029 (+) True G133921
TU168042 lncRNA downstream 259488 8276375 ~ 8276580 (+) True G133947
AMCG00011986 mRNA upstream 23131 7970457 ~ 7976097 (+) True AMCG00011986
AMCG00011985 mRNA upstream 44215 7931795 ~ 7955013 (+) True AMCG00011985
AMCG00011987 mRNA upstream 70990 7925593 ~ 7928238 (+) True AMCG00011987
AMCG00011980 mRNA upstream 114967 7878175 ~ 7884261 (+) True AMCG00011980
AMCG00011981 mRNA upstream 178836 7816096 ~ 7820392 (+) True AMCG00011981
AMCG00011994 mRNA downstream 3917 8020804 ~ 8025061 (+) True AMCG00011994
AMCG00011993 mRNA downstream 12599 8029486 ~ 8037681 (+) True AMCG00011993
AMCG00012006 mRNA downstream 361446 8378333 ~ 8397041 (+) True AMCG00012006
AMCG00012005 mRNA downstream 381139 8398026 ~ 8401203 (+) True AMCG00012005
AMCG00012004 mRNA downstream 409133 8426020 ~ 8428680 (+) True AMCG00012004
TU167842 other upstream 28310 7960698 ~ 7970918 (+) False AMCG00011986
TU167660 other upstream 432882 7565387 ~ 7566346 (+) False AMCG00011971
TU167659 other upstream 433200 7564808 ~ 7566028 (+) False AMCG00011971
TU167656 other upstream 490477 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 756928 7236941 ~ 7242300 (+) True G133619
TU167865 other downstream 11176 8028063 ~ 8032609 (+) False AMCG00011993
TU167873 other downstream 35237 8052124 ~ 8055021 (+) True G133822
TU168052 other downstream 366226 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 501127 8518014 ~ 8519026 (+) False AMCG00012008
TU168082 other downstream 544155 8561042 ~ 8563214 (+) True G133974

Expression Profile