RNA id: TU167865



Basic Information


Item Value
RNA id TU167865
length 584
RNA type TUCP
GC content 0.56
exon number 6
gene id AMCG00011993
representative False

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8028063 ~ 8037681 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGAACTCGGCCTGTTTCCGACCACTTCTTCCACACACTGCTTTTTGGACCTctatctccctgtctttccACGCCCTATGGgagAACATCCAGGAGAACCAGGCAAATTCACCAAGGAGCTCCAAAGGCACCCTGAGCTCTACAGCAAGGAGGACAATGGGTGGTTCCATCTGCCGCAGAAGGCATTTGATGAGTGTGGAGAGTTTGCCTCCGTGAAGTACCAGGTGGAGGAGGTGCCCAAGCCCATCGACTCCTCCAAGATGACTCCAGCAGACTGGGAAAACATTGCCCACAAGATCTTGGACCAGGATAAGAAAGGCTTCGATGGCTTTGTCATCCTCCACGGGACCGACACCCTGGCCTACACCTCCTCAGCTCTGTCCTTCCTGCTGCAGGGACTGAACAAGCCTGTGGTGGTGACTGGGGCACAGAGGTCTCTGTTTGAGCCGCGCTCCGATGCCGTCAGCAACATCCTGGGCTCTCTGCTGATCGCCGGCTGCTACTGCAAGAACCCCGCGCTGCAGCAGAACCTTCTTTGCTCAGTGCTCCaggacatctctctctctctctctctctctctctctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU167871 lncRNA upstream 24551 8002780 ~ 8003512 (+) True G133820
TU167857 lncRNA upstream 101837 7925136 ~ 7926226 (+) False AMCG00011987
TU167816 lncRNA upstream 184592 7830564 ~ 7843471 (+) True G133783
TU167649 lncRNA upstream 452898 7551295 ~ 7575165 (+) True G133665
TU167674 lncRNA upstream 471351 7545283 ~ 7556712 (+) True G133681
TU167877 lncRNA downstream 29984 8062593 ~ 8117249 (+) True G133825
TU167884 lncRNA downstream 47146 8079755 ~ 8100437 (+) True G133832
TU167885 lncRNA downstream 88290 8120899 ~ 8124699 (+) True G133833
TU168009 lncRNA downstream 164210 8196819 ~ 8197029 (+) True G133921
TU168042 lncRNA downstream 243766 8276375 ~ 8276580 (+) True G133947
AMCG00011994 mRNA upstream 3002 8020804 ~ 8025061 (+) True AMCG00011994
AMCG00011992 mRNA upstream 11176 7999228 ~ 8016887 (+) True AMCG00011992
AMCG00011986 mRNA upstream 51966 7970457 ~ 7976097 (+) True AMCG00011986
AMCG00011985 mRNA upstream 73050 7931795 ~ 7955013 (+) True AMCG00011985
AMCG00011987 mRNA upstream 99825 7925593 ~ 7928238 (+) True AMCG00011987
AMCG00012006 mRNA downstream 345724 8378333 ~ 8397041 (+) True AMCG00012006
AMCG00012005 mRNA downstream 365417 8398026 ~ 8401203 (+) True AMCG00012005
AMCG00012004 mRNA downstream 393411 8426020 ~ 8428680 (+) True AMCG00012004
AMCG00012007 mRNA downstream 431596 8464205 ~ 8468828 (+) True AMCG00012007
AMCG00012008 mRNA downstream 477402 8510011 ~ 8520648 (+) True AMCG00012008
TU167842 other upstream 57145 7960698 ~ 7970918 (+) False AMCG00011986
TU167660 other upstream 461717 7565387 ~ 7566346 (+) False AMCG00011971
TU167659 other upstream 462035 7564808 ~ 7566028 (+) False AMCG00011971
TU167656 other upstream 519312 7505082 ~ 7508751 (+) True G133667
TU167596 other upstream 785763 7236941 ~ 7242300 (+) True G133619
TU167873 other downstream 19515 8052124 ~ 8055021 (+) True G133822
TU168052 other downstream 350504 8383113 ~ 8387097 (+) False AMCG00012006
TU168076 other downstream 485405 8518014 ~ 8519026 (+) False AMCG00012008
TU168082 other downstream 528433 8561042 ~ 8563214 (+) True G133974
TU168537 other downstream 1618740 9651349 ~ 9653234 (+) True G134291

Expression Profile