RNA id: AMCG00011999


Basic Information

Item Value
RNA id AMCG00011999
length 459
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00011999
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8266797 ~ 8268396 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACATTGTGGATGAGTTTGGTGCTGCTGCTTCTCCAGCTGATCTCCATCTCTACGACAGCCTCTGGCACCCTGCCAGTGATCTCTATAGAGGGACACCAGGAAGGGGGGATCGGCCTGGTGTGTGAATCTAAAGGCTGGTACCCTGAGCCTGCGCTGGTCTGGATGGACAGTGAAGGACAGAGTCTCACTGCTGGACGTACAGAGACGGTCAGAGACAGTCGGGACCTCTTCACTGTGAGAGGACAGGTGATCATACAGGAGAGAGACATCAACAGGTACACCTGCAGTGTCACACAGCAGCAGCTCAATGAAGGGAAggacacaaaaatgtacattcccAGTGAATTGTTCCCCCGTGTCTCTCCCTGGATGAAGgccttctttgtttttttcacattttttctcATTGCTTTGAATGTTGGTGTATTTTTCTACTTTAAACTGCGCAGagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168002 lncRNA downstream 78104 8188289 ~ 8188693 (-) True G133915
TU167983 lncRNA downstream 206921 8047229 ~ 8059876 (-) False AMCG00011995
TU167971 lncRNA downstream 214552 8004018 ~ 8052245 (-) True G133891
TU167751 lncRNA downstream 601511 7664371 ~ 7665286 (-) False AMCG00011974
TU167730 lncRNA downstream 691650 7551295 ~ 7575147 (-) False G133714
TU168111 lncRNA upstream 162592 8430988 ~ 8483657 (-) True G133997
TU168210 lncRNA upstream 534011 8802407 ~ 8802986 (-) True G134069
TU168298 lncRNA upstream 886040 9154436 ~ 9191292 (-) True G134143
TU168438 lncRNA upstream 1145920 9414316 ~ 9416458 (-) True G134226
TU168546 lncRNA upstream 1387960 9656356 ~ 9656645 (-) True G134298
AMCG00011998 mRNA downstream 46990 8206949 ~ 8219807 (-) True AMCG00011998
AMCG00012001 mRNA downstream 65823 8198945 ~ 8200974 (-) True AMCG00012001
AMCG00012002 mRNA downstream 99137 8166537 ~ 8167660 (-) True AMCG00012002
AMCG00012000 mRNA downstream 128278 8136791 ~ 8138519 (-) True AMCG00012000
AMCG00011996 mRNA downstream 192379 8066685 ~ 8074418 (-) True AMCG00011996
AMCG00012003 mRNA upstream 80904 8349300 ~ 8354375 (-) True AMCG00012003
AMCG00012009 mRNA upstream 205710 8474106 ~ 8475050 (-) True AMCG00012009
AMCG00012013 mRNA upstream 345552 8613948 ~ 8617088 (-) True AMCG00012013
AMCG00012012 mRNA upstream 357759 8626155 ~ 8627675 (-) True AMCG00012012
AMCG00012017 mRNA upstream 435386 8703782 ~ 8710771 (-) True AMCG00012017
TU167732 other downstream 710089 7545355 ~ 7556708 (-) True G133715
TU167719 other downstream 717145 7509749 ~ 7549652 (-) True G133712
TU167720 other downstream 717145 7509749 ~ 7549652 (-) False G133712
TU167712 other downstream 721692 7543575 ~ 7545105 (-) False G133712
TU167722 other downstream 771164 7492870 ~ 7495633 (-) True G133713
TU168124 other upstream 220804 8489200 ~ 8565264 (-) True G134005
TU168169 other upstream 431015 8699411 ~ 8701641 (-) True G134036
TU168269 other upstream 872428 9140824 ~ 9145295 (-) True G134119
TU168464 other upstream 1266872 9535268 ~ 9538892 (-) True G134244
TU168522 other upstream 1344514 9612910 ~ 9625601 (-) False AMCG00012058

Expression Profile