RNA id: AMCG00012004



Basic Information


Item Value
RNA id AMCG00012004
length 732
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00012004
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8426020 ~ 8428680 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATGGGGATCTTCATCAAGGGTCTGGCTTTGCTCATCGGCCTCCTATGCTCCCCCTCAGGAGGGCAGGAAGAGAAAAAGAAAGAGTTTAAGGTCAACGTCCCATTGGCCCCCATTGTGGCTCACGAGGGCAGCAACGTTGTCCTCCTCTGTCACATCTCACCTGAGCAGAGCGCCGTGGCCATGGAGGTGCGCTGGTTCAAAGTCAGCTTCACTGACTTCCTCTACCACTACAAGGAAAGGATGGGGACAGAAGGAAATCAGTACAAGGGCAGGGTAGCATTGTTCCTCCCAGAGCTGGAGAAAGGCAACACTTCTCTCCTGCTGAAGAACGTCAAGATCTCAGACCAGGGGGAGTACACCTGTAACGTCAACTCAGGGAGCTGGTACGAGGAGCCCCAGCTGAACCTAGTGGTCAGAAGCCAGGGCACCAAACCCACGATAGAAGTTTTAAAGCAAGAGAAAGACTCTGTTCAGCTGAGCTGCAGTTCTGAGGGCTGGTACCCTGAGCCACAGATGTTCTGGACAGACAAGAGAGGGGCCAACGTGTCTGCCAACAGAGAGCTGCCCAAACAGCAGAACAGAGACAGCACCTACAGCATTGCGAGCCACATCTTGGTGAGCCGGGCCCGCAGTGAGGGGCTGCACTGTGTGGTTaaacagcaggagcaggagcagcagtTTGAATGTGGGATCAAGATCAACGGTAGGTCAAGTAGCTCAAAGAGGCTG

Function


GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168042 lncRNA upstream 149440 8276375 ~ 8276580 (+) True G133947
TU168009 lncRNA upstream 228991 8196819 ~ 8197029 (+) True G133921
TU167885 lncRNA upstream 301321 8120899 ~ 8124699 (+) True G133833
TU167877 lncRNA upstream 308771 8062593 ~ 8117249 (+) True G133825
TU168067 lncRNA downstream 20363 8449043 ~ 8578268 (+) True G133961
TU168143 lncRNA downstream 190827 8619507 ~ 8623220 (+) True G134018
TU168146 lncRNA downstream 195538 8624218 ~ 8627183 (+) True G134019
TU168166 lncRNA downstream 270731 8699411 ~ 8700618 (+) True G134033
TU168167 lncRNA downstream 273669 8702349 ~ 8702598 (+) True G134034
AMCG00012005 mRNA upstream 24817 8398026 ~ 8401203 (+) True AMCG00012005
AMCG00012006 mRNA upstream 28979 8378333 ~ 8397041 (+) True AMCG00012006
AMCG00011993 mRNA upstream 388339 8029486 ~ 8037681 (+) True AMCG00011993
AMCG00011994 mRNA upstream 400959 8020804 ~ 8025061 (+) True AMCG00011994
AMCG00011992 mRNA upstream 409133 7999228 ~ 8016887 (+) True AMCG00011992
AMCG00012007 mRNA downstream 35525 8464205 ~ 8468828 (+) True AMCG00012007
AMCG00012008 mRNA downstream 81331 8510011 ~ 8520648 (+) True AMCG00012008
AMCG00012010 mRNA downstream 158450 8587130 ~ 8587981 (+) True AMCG00012010
AMCG00012011 mRNA downstream 166336 8595016 ~ 8601876 (+) True AMCG00012011
AMCG00012016 mRNA downstream 241809 8670489 ~ 8670824 (+) True AMCG00012016
TU168052 other upstream 38923 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 370999 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 393411 8028063 ~ 8032609 (+) False AMCG00011993
TU167842 other upstream 455102 7960698 ~ 7970918 (+) False AMCG00011986
TU167660 other upstream 859674 7565387 ~ 7566346 (+) False AMCG00011971
TU168076 other downstream 89334 8518014 ~ 8519026 (+) False AMCG00012008
TU168082 other downstream 132362 8561042 ~ 8563214 (+) True G133974
TU168537 other downstream 1222669 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 1227677 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 1424210 9852890 ~ 9867143 (+) True G134338

Expression Profile