RNA id: AMCG00012005



Basic Information


Item Value
RNA id AMCG00012005
length 354
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00012005
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8398026 ~ 8401203 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTGTGTCGAGAAGGACCACAACACCCACAAGATTGTGACTGCTGAGACtgagtgcaaaaataaaaagGAAAAGCTAGGGGACACGAAAGCTGAAATGCAGACGATGATCCGGGACAGACGGAAGAAGGTGGAGGAGATCAAACAGTCAGTGGAGCTCAGCGAAAATTTGTCCTCCCTGCAGCCCCCTCCAGACCTGAAGGAACTGGATGACATCACTGTCAACACTGACCTCTGTCTGGGCACTGTGAGGAGGCATGTGTCCAGGATGCTGCAGAGCATTCACAGAGAGCTTGAGGAACTGCCCTCCATTGAGCTTAAGAGGATCCAGAAATATTCAGGTACATATTTATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168042 lncRNA upstream 121446 8276375 ~ 8276580 (+) True G133947
TU168009 lncRNA upstream 200997 8196819 ~ 8197029 (+) True G133921
TU167885 lncRNA upstream 273327 8120899 ~ 8124699 (+) True G133833
TU167877 lncRNA upstream 280777 8062593 ~ 8117249 (+) True G133825
TU168067 lncRNA downstream 47840 8449043 ~ 8578268 (+) True G133961
TU168143 lncRNA downstream 218304 8619507 ~ 8623220 (+) True G134018
TU168146 lncRNA downstream 223015 8624218 ~ 8627183 (+) True G134019
TU168166 lncRNA downstream 298208 8699411 ~ 8700618 (+) True G134033
TU168167 lncRNA downstream 301146 8702349 ~ 8702598 (+) True G134034
AMCG00012006 mRNA upstream 985 8378333 ~ 8397041 (+) True AMCG00012006
AMCG00011993 mRNA upstream 360345 8029486 ~ 8037681 (+) True AMCG00011993
AMCG00011994 mRNA upstream 372965 8020804 ~ 8025061 (+) True AMCG00011994
AMCG00011992 mRNA upstream 381139 7999228 ~ 8016887 (+) True AMCG00011992
AMCG00011986 mRNA upstream 421929 7970457 ~ 7976097 (+) True AMCG00011986
AMCG00012004 mRNA downstream 24817 8426020 ~ 8428680 (+) True AMCG00012004
AMCG00012007 mRNA downstream 63002 8464205 ~ 8468828 (+) True AMCG00012007
AMCG00012008 mRNA downstream 108808 8510011 ~ 8520648 (+) True AMCG00012008
AMCG00012010 mRNA downstream 185927 8587130 ~ 8587981 (+) True AMCG00012010
AMCG00012011 mRNA downstream 193813 8595016 ~ 8601876 (+) True AMCG00012011
TU168052 other upstream 10929 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 343005 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 365417 8028063 ~ 8032609 (+) False AMCG00011993
TU167842 other upstream 427108 7960698 ~ 7970918 (+) False AMCG00011986
TU167660 other upstream 831680 7565387 ~ 7566346 (+) False AMCG00011971
TU168076 other downstream 116811 8518014 ~ 8519026 (+) False AMCG00012008
TU168082 other downstream 159839 8561042 ~ 8563214 (+) True G133974
TU168537 other downstream 1250146 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 1255154 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 1451687 9852890 ~ 9867143 (+) True G134338

Expression Profile