RNA id: AMCG00012009


Basic Information

Item Value
RNA id AMCG00012009
length 420
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00012009
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8474106 ~ 8475050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGAGCATCACCAGAGAGCTGACTGTGATGATCATTTGCATGTTTTCCTCCTTTGGAGGGCAGGACACAAGAAAGTTGAGTGTTGTGGTCCCACTGGGGCCCTTGTTCATCAATGAGGGCAGCAACATTGTCCTCCCCTGTCACCTAAACCCTGAAGCGAGCGCAGTGACCATGGAGGTGAGGTGGTTCAGAGAGGACTTTGATGACACTGTCTATGTGTACAATTATGGGAAGGTCACAGACGGGTCGGCCTACAGGGGCAGAGCAACGCTGTTCCACCAGGAACTGATCAGAGGCAATGTCTCCCTGCTACTAAAAAATGTCAGGATCTCAGACAATGGCTTGTACAGGTGTCACGTCAGCTCTGGACAATGGTTCGAGGAACCGCAGCTGCATTTACTGGTTAGACGTGAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168002 lncRNA downstream 285413 8188289 ~ 8188693 (-) True G133915
TU167983 lncRNA downstream 414230 8047229 ~ 8059876 (-) False AMCG00011995
TU167971 lncRNA downstream 421861 8004018 ~ 8052245 (-) True G133891
TU167751 lncRNA downstream 808820 7664371 ~ 7665286 (-) False AMCG00011974
TU167730 lncRNA downstream 898959 7551295 ~ 7575147 (-) False G133714
TU168210 lncRNA upstream 327357 8802407 ~ 8802986 (-) True G134069
TU168298 lncRNA upstream 679386 9154436 ~ 9191292 (-) True G134143
TU168438 lncRNA upstream 939266 9414316 ~ 9416458 (-) True G134226
TU168546 lncRNA upstream 1181306 9656356 ~ 9656645 (-) True G134298
TU168676 lncRNA upstream 1317260 9792310 ~ 9799446 (-) True G134396
AMCG00012003 mRNA downstream 119731 8349300 ~ 8354375 (-) True AMCG00012003
AMCG00011999 mRNA downstream 205710 8266797 ~ 8268396 (-) True AMCG00011999
AMCG00011998 mRNA downstream 254299 8206949 ~ 8219807 (-) True AMCG00011998
AMCG00012001 mRNA downstream 273132 8198945 ~ 8200974 (-) True AMCG00012001
AMCG00012002 mRNA downstream 306446 8166537 ~ 8167660 (-) True AMCG00012002
AMCG00012013 mRNA upstream 138898 8613948 ~ 8617088 (-) True AMCG00012013
AMCG00012012 mRNA upstream 151105 8626155 ~ 8627675 (-) True AMCG00012012
AMCG00012017 mRNA upstream 228732 8703782 ~ 8710771 (-) True AMCG00012017
AMCG00012018 mRNA upstream 264527 8739577 ~ 8748073 (-) True AMCG00012018
AMCG00012020 mRNA upstream 321090 8796140 ~ 8805330 (-) True AMCG00012020
TU167732 other downstream 917398 7545355 ~ 7556708 (-) True G133715
TU167719 other downstream 924454 7509749 ~ 7549652 (-) True G133712
TU167720 other downstream 924454 7509749 ~ 7549652 (-) False G133712
TU167712 other downstream 929001 7543575 ~ 7545105 (-) False G133712
TU167722 other downstream 978473 7492870 ~ 7495633 (-) True G133713
TU168124 other upstream 14150 8489200 ~ 8565264 (-) True G134005
TU168169 other upstream 224361 8699411 ~ 8701641 (-) True G134036
TU168269 other upstream 665774 9140824 ~ 9145295 (-) True G134119
TU168464 other upstream 1060218 9535268 ~ 9538892 (-) True G134244
TU168522 other upstream 1137860 9612910 ~ 9625601 (-) False AMCG00012058

Expression Profile