RNA id: AMCG00012011



Basic Information


Item Value
RNA id AMCG00012011
length 438
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00012011
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8595016 ~ 8601876 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACCCGGGATATGAAATCAGAAGGCAGAGCAGTGAGGTGgacagaagaaaagcaaaagctCCCAGACATCCCAGAGCAGTTTGATGAATACCCCAGTGTACTTGGGAACAAGACAGAGACCAGCTACTGGGAGGTGAAGGTGGGAGTTGAGGGTTATTTCTTGAAGAGATGCCAGTCACGAGTGACAGAGACCCTGGACATGAACACAGTCAGCCCCCATTTGACTGTGTCAAGAGGTGGTATAGTGAGGTGCAGGCTGGGAGCAAGGCATTCTTGGAGCTGGGTCACCAAGTTAACCTGCAAAAAACGGCAGCTAACCCTGAGCCCTGAGCAGGGCTTCTGTGTCCTCAGCTGTGAGTATGGTAAGATGAATGCTCTGACTAACCCTGAGACCCCCCTTACCTTGAGCATCCCCAGCAGAGTGGGGTATATCTGA

Function


GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168067 lncRNA upstream 16748 8449043 ~ 8578268 (+) True G133961
TU168042 lncRNA upstream 318436 8276375 ~ 8276580 (+) True G133947
TU168009 lncRNA upstream 397987 8196819 ~ 8197029 (+) True G133921
TU167885 lncRNA upstream 470317 8120899 ~ 8124699 (+) True G133833
TU167884 lncRNA upstream 494579 8079755 ~ 8100437 (+) True G133832
TU168143 lncRNA downstream 17631 8619507 ~ 8623220 (+) True G134018
TU168146 lncRNA downstream 22342 8624218 ~ 8627183 (+) True G134019
TU168166 lncRNA downstream 97535 8699411 ~ 8700618 (+) True G134033
TU168167 lncRNA downstream 100473 8702349 ~ 8702598 (+) True G134034
TU168168 lncRNA downstream 101873 8703749 ~ 8703968 (+) True G134035
AMCG00012010 mRNA upstream 7035 8587130 ~ 8587981 (+) True AMCG00012010
AMCG00012008 mRNA upstream 74368 8510011 ~ 8520648 (+) True AMCG00012008
AMCG00012007 mRNA upstream 126188 8464205 ~ 8468828 (+) True AMCG00012007
AMCG00012004 mRNA upstream 166336 8426020 ~ 8428680 (+) True AMCG00012004
AMCG00012005 mRNA upstream 193813 8398026 ~ 8401203 (+) True AMCG00012005
AMCG00012016 mRNA downstream 68613 8670489 ~ 8670824 (+) True AMCG00012016
AMCG00012015 mRNA downstream 77028 8678904 ~ 8698447 (+) True AMCG00012015
AMCG00012014 mRNA downstream 124947 8726823 ~ 8730941 (+) True AMCG00012014
AMCG00012019 mRNA downstream 203225 8805101 ~ 8839751 (+) True AMCG00012019
AMCG00012023 mRNA downstream 246450 8848326 ~ 8866791 (+) True AMCG00012023
TU168082 other upstream 31802 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 75990 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 207919 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 539995 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 562407 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 1049473 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 1054481 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 1251014 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 1334050 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 1432310 10034186 ~ 10034693 (+) True G134357

Expression Profile