RNA id: AMCG00012014


Basic Information

Item Value
RNA id AMCG00012014
length 2564
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00012014
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8726823 ~ 8730941 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCTGTGCTCTGATTACCAATACCACGTCGACCCGTAGAGTCTGTCCAACATCAGGCTGTTAGacgggttttatttatttgcttctgTTAGGCATTGTGATGTTGGttgtcttgtttatttgaatgagTGGTTGTAGACGTTGTGCTCTGAGGAAGTGTAGATCCCAGGTGGACTGTAACCATCACTGGTTCCCCCCTGGCTTGATGGAGTCACAGGAAGCTGCTACAGTGCTGCAGATATTAACAGCAAGGATGTCCACCCTGGTGTTGCTCAGCCTGTGGGCTATGGGGGGCTGTGTGGCTTTCCAACAGACTGTCATGCCTCTGTTGCCCAATGTGCCTTTCCTGACGGTTTGGAATGCCCCAACGCAGGCCTGCAAGACCAAGTATGGTGTGGACCTGGACCTCAGCCAATTTGACATCACACTGAACCAGAATGAGAGCTTCATAGGGGACAATATCACCATCTTCTACATGAACCAACTGGGCCGCTACCCTTTTTACACACCCCAGGGGGCACCAGTGAATGGGGGGGTGCCACAGAATGCCAGTCTGCCAGAACACTTGCAGTATGCACGGGCTGACATCAAGCGGTACATCCCAAACTCTCCTTACTCAGGCCTGGCGGTTGTGGACTGGGAGAGCTGGCGACCACTGTGGGTGCAGAACTTTGATTCCAAAAAGGTGTACAAGGAGGCCTCCAGGGCACTGGTGTGGCAGAAGCACCCCAATTGGACCACGCTTCAAGTGGAAAGCGAAGCCCAGAGGGAGTTCCAAGAGGCTGGACGGGCGTTCATGGAGGATACACTCCAGCTGGGCCGCGAGATGAGACCTGGGGGCCGGTGGGGGTTCTACGGTATGCCCAACTGCTTCAACCAGTACACAAACACCTCGGTGAACTACACAGGGAAGTGTGCTGAAGTGCATATGAAGAGAAACGATGAAATGGGCTGGCTCTGGCAGGCCAGTTCTGCCCTGTACCCAAGCGTCTATCTGGGATCAGGCCTGCGTGGCAAGGGGGATGCTATCCGGCTGTACATCCAAAACACTGTATTGGAAGCCAAGAGGTGCTCAGGACAGGTGACCCCCATCAGCCCATCTGTGCTGCCCTATGCTAGCATAGTCTATTATTCCCTGGAGTTCCTTTCACAGGAGGACTTGGTTCACACCATTGGGGAGTCCGCAGCACTGGGAGCAGTGGGGATTGTGCTCTGGGGAAGTGGACAGTATGCAGCATCTCAGGCTAGTTGCACCAAGTTAAAAACCTACCTGCATGGGGTGCTGGGCAGGTACCTGCTGAACGTGTCCACAGCGGCAGAGTTGTGCAGCAAGGAGAGATGCAGTGCTAATGGACGCTGCATGCGGAAAACCACCAATAGTGATGCGTACCTACACCTCAATCCTGCCAGCTTCACAGTCTTGCAGAACCTGACTGTCAAGGGAGCACTGAGTGAGGGAGACCAAGAGTTCTACAACACAGAGTTTGGGTGTCAGTGCTACAAGGGGCACAAGGGAGAATCCTGCACTCAGACTGACACTGGCAGCTCCACTGGCCTGAGGACCACTATGATCAGCCTCCTATTCTCCATTAGCCTGTTGTGGCTGCTATTGTAGAGCAGTAGGGTGGGAGGCACAACTGCccctgcagaaaacaaatgtgttcctTCTCCAGGGTTGACTGGTTACCTATCAATTCTAGTAGTGTTTTGCAAATCTTATGACAAAGGAAGAAAAgtgaaaaagcaacaaaacaaacaagaaaacaaatgcattaatttgCAGCACCTATCCTCAATAACATAGTGAGGAAGTGATGGATGGCATCTGTAATAATGAGCAAATGGCCATCAGTGGTAGAAAGCTGTGTGACTGCCAAGCATTTATAGAGGAAAACAAAGTGTATCTGAAAGCAAAGCAGTTTCCCAGAGTAGCCTACTTGTTTACAGATTACTATTTTGCACATAATCATGgagatacatttcaaaagtaTGGAAGGTGATTGTCGTTAAGTGGATGCTGTATTAATACAATGAGGTCATTATGCTGAGAAGCCCAGTCAGTTAGGTTGTCAGTGTTATGTAGACACTAGTTGCTGAGATACCATTTGGGGTTAAAGGGTAAAGAAAAAAgggtaaataataaatgaagaaacagaACATAAACCTAGGTTCTGCACTTAAttacaaacatgaaaaacaaattgcatacTGTGTACAGGCTGTGTAGGTGCATACAGTAGCCCTAATACTGGTACATAATATTAACTCCCTCCTTGAAAAAGAAAGGTCCTGCAACTCTTCTCTCACCGGACATAGCCTGAAGGCCTGAAGGAAGAGTATTCTTCCAACCCAGAACTCTGGGCTGGGCACCTCTACAGCTGGGGGAAGAGAAAGTGAAGCCTTTGAGCAAAGAGCTGATGAACAGGAACAGACACACCCTCTTGCCTGAAGAAAGAAGAGCACAGGATTTAATCATGTGTTAAgataatttgtatttctattttccCACCAAGAAATAAAGTACTTTAATAAGGGCATAAATGAAAATCAGTGGAATTTGTGTT

Function

GO: NA

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168168 lncRNA upstream 22855 8703749 ~ 8703968 (+) True G134035
TU168167 lncRNA upstream 24225 8702349 ~ 8702598 (+) True G134034
TU168166 lncRNA upstream 26205 8699411 ~ 8700618 (+) True G134033
TU168146 lncRNA upstream 99640 8624218 ~ 8627183 (+) True G134019
TU168143 lncRNA upstream 103603 8619507 ~ 8623220 (+) True G134018
TU168209 lncRNA downstream 71582 8802523 ~ 8802878 (+) True G134068
TU168230 lncRNA downstream 157776 8888717 ~ 8888946 (+) True G134084
TU168296 lncRNA downstream 463621 9194562 ~ 9195917 (+) True G134141
TU168335 lncRNA downstream 549944 9280885 ~ 9309931 (+) False AMCG00012043
TU168426 lncRNA downstream 670513 9401454 ~ 9414917 (+) True G134222
AMCG00012015 mRNA upstream 28376 8678904 ~ 8698447 (+) True AMCG00012015
AMCG00012016 mRNA upstream 55999 8670489 ~ 8670824 (+) True AMCG00012016
AMCG00012011 mRNA upstream 124947 8595016 ~ 8601876 (+) True AMCG00012011
AMCG00012010 mRNA upstream 138842 8587130 ~ 8587981 (+) True AMCG00012010
AMCG00012008 mRNA upstream 206175 8510011 ~ 8520648 (+) True AMCG00012008
AMCG00012019 mRNA downstream 74160 8805101 ~ 8839751 (+) True AMCG00012019
AMCG00012023 mRNA downstream 117385 8848326 ~ 8866791 (+) True AMCG00012023
AMCG00012022 mRNA downstream 152688 8883629 ~ 8885897 (+) True AMCG00012022
AMCG00012024 mRNA downstream 171355 8902296 ~ 8910971 (+) True AMCG00012024
AMCG00012021 mRNA downstream 190967 8921908 ~ 8928713 (+) True AMCG00012021
TU168082 other upstream 163609 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 207797 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 339726 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 671802 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 694214 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 920408 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 925416 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 1121949 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 1204985 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 1303245 10034186 ~ 10034693 (+) True G134357

Expression Profile