RNA id: AMCG00012019


Basic Information

Item Value
RNA id AMCG00012019
length 8926
RNA type mRNA
GC content 0.50
exon number 40
gene id AMCG00012019
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8805101 ~ 8839751 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGGAGCAGCGCGGCGGTGCAGTTTCGGATTGTAATCCCTGGGAAAGCCGAGATTTGCAGAgggatcaaaataaaaacaaacggAATAAAAAGGCACCGCCGGGATGGAGTCAAAACACCAGCACAACGAATAACGATATGAAGGGCTGGCTGGGAAAATGGGCTTCACGATGAGCATCGGATAATCGTATGGATGTACACCTGGCATCTGGCAGGAGATTTGGGCATCTTTCTACCAATTCCcttagattatttttattttaaactagttTCGAAAGCGGAGGCGGCGCCGCGATCCCCGGCGTCGGCGTGGGTTCGCGCCCGGCAGGGAGGAGGCCCCAGGCGGCGGCACTGGGAACCCGAGAGCGGGGATAGGCCTGGGCGCCGGAAACTGGAATTGCGGTCGTGTTTTTCGGAACAAGGgaaggacaaaataaataaataaaataatacgcATTGGGGAGTGAGAAGCGCATTGTGTGTAGATGGTGTTTGTATAGGCCGGGGATCTTTATAGAccgtttctttatttaaaacataaaaaggatcCACAAGCGCCTGCTCTCTTTTGATCTCTCCTGCGGTGTAACCTGTGCGCGTCGGGATATTATGGGATACAGTGGGTGTTTTGAAGTGGTTTTTGTGGCAGAAACACAATTGTGTGGTGTGCACGCACCTGCTGTGTTGTGTCGCTGAATGCACTGCTTTAGATTTGATTATATTACCGACATAAAGGCGAAactggaaaacagaaataagcATTGCATTTACTGACATCATTCGCGTGCATGTCGTGTTTTGCTTGCAAACAATGAAAGGGTTATTCTGCAATGAAGCAtatagttattgctgttattgaGACTTTGAAGACTGACCAACTagctatttttaattgttattattacagtgGATCGTCTATTGTATCCCACTGCCGCTAGTTTCCATGCTACATTGATATACAGCCCATGGGTTGATTGAATGGGAGCTACATGGTGCTGTCAGTGTCCTTAGCTCCTGCTATACTGGAATAATCACAATGCTGCAGCTGAGACACCTCTAATTTTAGCACTAACACCAATTGTTACCCCTGGGGATTAACCGCACCGATCTGATGTAATTTGAAGTTTACAGCCAGGCAAGTTGCAGCTGCATTTGTTGCAAGCAAAGAGAGAAAGTTATGAATCATTGATAACCATATTTTCCACTGATAACACGGTGACTGGACCAACTGATCCGTTTCCTAGTCTAAACATTGACAATGGGTGAGGAGGAAGCTTTTCCCATTCGCTCCAGTGACATGCATCGCAGGGTGGGGATCCCAGTAGAAATGGGGTGTTAAATCTGTGCACACATGCCGCCAGAGAAAAAAAGCCAGGATTGCACGGTTTGGGGGAAATGTTGATGCTTGGAAATGGTGcagactgtttaaaatgaaactaaatctGCACACCCTGGCAGTGCTTTGAGGAGTGGTGCTGCAACAAAGTTTTGAAACGGGCGATATTTGACTTCGTATTCAAGTGAGTTGTGCAGTCAAACATaggggttttattttattttaattttttccagctAATTTGTTTagttgcttatttatttatgttttatatacatgttttaaatgctaCAAGGGAGATGGAAATGATACAAAAGgatcaaaacaaaaggaagtgTTTACttgccactgttttttggtgACACCATCTTTCTTGGCTTGGATTTCTGTTACTTCGGACAGTTGGGAAATATAGCTGAACATATACATactgacttttgtttttgaagacttTCGAagacaaggaaagaaaagttgTTTGCACTTTATTTGGGGAGACTAACTGgacaagaaaagcaaaatgaCTCTAATTTTAGCATCCTGACCCACCTCACAAGAACCTATCCCAGatacattgaaacatttttcCTATTGGGTTTGGACTCGAAACAAGGACACTGGCTACATTGGACATAACCGGACTATAGCTATGAGCCTTCGAACTCCCACGTCGGCTCTGGACAGGTTAAGCAGCCTATCCATGGGAGACTCTGACCGCAGGAATTCCTCCGGCCAGCTGAGGGAGTCGCTCTCTGACTGCACCACTGAGAACACAGGGTTAGTGCAGAGGTGTGTCATTGTGCAGAGGGACCAGCTCGGGTTCGGGTTCACAGTATGCGGGGAGCGGATCAAGCTGGTGCAGAATGTGAGGCCAGGAGGCGCGGCAGTAAAAGCGGGCGTTCACGAGGGCGATAGAATCATCAAGGTGAATGGATGCCTGGTGTCTTCAATGTCTCACCATGAAGTGGTGAAACTAATCAAATCCGGCACCTATGTGGCCCTCACCTTGCAAGGGCCGCCCCCTTCGACGgcatccctccctctccagcCCCTACCAACGGACATCTCGCCCAATCACAAGGTGCCGCCGGGAGGGGTGAGcccacccccgcccccaccccccctgccACCAGCCTCCCTGACCCAGCCCTCCTCTCAGCGCATCACCGGGCCCAAGCCACTGCAGGACCCTGAGGTACAGAAACACGCCACTCAGATTCTCAGGAAGATGCTGAAACAGGAAGAGGCGGAGTTACAGGATCTATTGGAGGAGCAGTTACgaaacccctccccttccctGGAGGAGCGAATAGAGAGTGCGAGGAGGCGGGCCAACCAAATGCGAGTGAAAATGCAGCAGGACCTGGAGGGCACGCGGTGCAGGTTGGAGTCTGCGGCCAGCTACCTGAGAGCGGGAGAAGGTCGTCTGTCCATGGATTCACAAGATGGCGATTTCGAGGGTTTTGAGAGCCCCAGGTCTTCCCCTTCGCTCCCGTCTCGGACGTCCCAGCACAGGAGACAGGGCTCGGAAACGTTCTTACCATCCGAGCAGGGCTCAAGACTCCAGATTATTGGgccagaggaagaggaggatgacgATGACTCCTACACCCAGAACGAGATGGACGGTCCCTTTCAGGATATAGAGCTGCTGAAGACGCGCCCGGCTCACATGACCGTCTTCATGCGATACATCTTCAGCCAGCTGCTCGATCCCAACCCTCTGCTCTTCTACCTGTCCGTGGAGGCCTACCTCAGCGCCAGCCCGAAAGATGCCCGCTCCATGGCACCGCAGATCTGCTCTAACTTCCTGGACAAAGAGGCGCCTTTAAAAATCCGCGTAACGGATGACGTCATGACAGACATAGacagTCGGCTTCAGGCGCAGGAGGACATCCGTGGGCCTCTGTCCGACATCCAGCAGCTGGTGCTCCCAGAGATCCAGGAGCAGATCCAGGATTACAGGTCTAAGCACGAGGAAGACAAGAGCTCTCCCATTGCTTCTGCTGTCCTTCTGTACTTGCGACATGCCGGCATCAAACTGAGGGACTCCCGGGTCTTCAGCATGCTGGACAAATCCCAGGAGAAGGAGAAGTGGCTGCCGTTCTTCCCCAAAGCCAAGAAGCCTAATGCTACCAAGAAAGAcaaggaaaaggagaaagacGGGGAGGACAAGAAGAGGAACCCCATCCTCAAATACATTGCAAAGCCGCGCAGCACCTCGCAGTCCACATTTCATGTTCCGTTGTCACCAACAGAAgTTCGCCCAGGCAATGTGCGCAATATCATCCAGCAGTTTGAGAACAACCAGCATGAAGGAGGCGAGCCGGGTGCACAGAGGCTGTCCACCGGGAGCCTGACCGAGGAGCTGCTGGAGTCCGAGAGCCTGGGCATCGGGGGGGTGAAGCTGGCGCGCTCCGAGTCCCTGAAAGCACAGGGCGAGGGGCGCAAGCCGCGGGTGGAGGTGGTCCCTCGGTCCCGCAGCGACGTGGACATGGAGGACGCAGCTGAGGAGAGGGACCGGGAAGCGGCCCGCCTGCACCAGtccgcctcctcctccgcctccagTCTCTCCGCCAGATCCCTGGAGAATCCCACCCCTCCCTACACTCCCAGGTCAAGACGGAAAAGCATAGACTCCCCAGTCTCGATGTTCCCCGAGAACCTACTCCCCCACCTGCCAGAGGATGACCCCGACACGCAGAACTGGCAGGAGACGGTGGGGCCTGACATCCTGTCCACCCTGGAGCCCCGGGAAATCGACCGGCAGGCCGTCATTTACGAACTCTTCACGACGGAATCCTCACACCTGCGGACGCTGAGGGTTCTCGATCAGGTCTTCTACCAGAAGATGAAGACCATCTTGAACCAGGAAGAGCTCGGCTGCATCTTCCCCAACTTGCCGGAGGTTTTCGAAGTGCATTCGTCCCTGTGTGAATCAATGAAGAAACTCAGGGAGTCTTCGATTGTGCAGAGCATTGGTGACATCATGCTAGTGAGGTTTGAAGGGGCCGCTGGTCAGGAGTTCCAGGAGAAGGTGTCTCAGTTCTGCAGTCACCAGGCCCAGGCCCTGGAGCTCATCAAGAGCAAGCAGCGCAAGGATCCTCGCTTCCAGCAGCTCATTCAGGAGTGTGAAGCCAATCCACAGTGCCGGAGGCTACAGCTGAAGGACCTGCTGGTTTCGGAGATGCAGCGACTGACCAAGTACCCTCTGCTGCTGGGGAACATCATGAAGTACACCGACGgctccAGTCCGGACCTCCTCTGCCTCCAGCGTGCTCAGGACTGCTGCCGCGGGATCCTGAAGAATGTCAACGAGGCGGTGAAGGAGACGGAGAACAGGCACCGGCTCTGCCAGTACCAGCGCAAACTGGACCTCACGGCCCTGGAGAGGATGACCAATCCAGTGGCGGCGCAGTTCAAGAACCTGGACTTGACGACAAAGAGGATGATCCACGAAGGCCCGCTGGTATGGAGAGTCAGTAAAGATAAAGCCATAGAGATCCAAGCTCTGTTACTGGAGGACCTGCTGGTCTTGCTGCAGCGGGTTGACGATCGGTTGGTCCTCCGCTGCCCGACCAGGAACCTGGGAGGAGGCAACAACGATGTCAAGATGTCCTTCAGCCCCATCGTCAGTCTGGACTCCCTGCTGGTCAGATTGGTGGCCACTGACAACAAGGCCCTGTACGTCATCAGCACATCAGAGCGACAGATCTACGAGCTGGTGGCAGGAACGTCCTCGGAGAAAAACACtTGGAAAGACCTGTTGGAGAAGGCAATCTCCCTGGCCTCTCTGTCGCCGGCTCCAGACAAACACAGGACAACGGCAGTCTCGTCGACCAGTCTGGATCTGGAGTCTTCAGTCTCACCTGGCAGTGGAGTTTACCAATCGGAAGATTCTCTGACTGAGAGCCCCGTGTCCATGGAGGCCGAGTCCCCAGAAGATGGCGACGAGGTCCTTACGCCCACCCCTCCGGCCGACCAATCAACGGAGAGCACGGATGACCTCACGGGGCCCAACTCCGAGGTTTTCCCTCCCCCTACCTGTGAGGGAGGGATTGCGGACGCTGCCTTGCTAGATGTGGAGAATCTCCggcatttgatttttaaaaacattgacgACGGGTGGAGCCAGGACTCGGACGACACACCCACCAACGAGACTGCCAATGAGACGCCCAGAGGAAGCAGCCCTTTTCCGTACCCcgcggagggggaggggaaaggCAGTGTCAACGCCCCCAAGTCTACAAGCAACAGCCAGTCAGAGTCCCGGGCCACAGAAGCCCCACCTCTTCAGTCAGTGTCCAGCATTAAAGTGGTCCGGAAAGCTGAGGGGGCGGGCACTTCTTCTATCCCTGACGACATCACTGATGTCACCCTTGACTCCAGCCAATCATGCGAGGAGAAAAGAGGCGGAGCCAATCTAGATGGCAATATGTTCTACCTGGTTATGCCAGAGGGTCCAAAGGAGAGCAGCACTGACGATACGGATGCGGTTAATGCACAGGCGGGGAACGGGGACGTCCGTGCCGATTCCAAGCAGGAAGTGACTTCATCGCTGGGGGCAAGCCAGGCCATCCCGGAGGCGGACCGTAGCCGGTTGCGCCTCTTCAGCCCATTGCAGCCGAAGGTGCAGCGACACGTCATCAGGAACGTGGATGAAATATTCCAGGCTATCGAGGAGCTGACTGCCAAACTGCACAAACTAAGGGAAATTGAAGTGGCTCATCGGCAGCTAGTGGAATCGCTGTCGGAGCAGCCAGCCAATCAGGGCACTGACCACGCCCAGGGGGAGCCCACTATACTTAGGACGCGCCCCTTTGACCGGGGAGCAGGTGATGGTAAGGAAGGCAGCCCAGCAGAAGCCAGTCCACCTGAGATACAGTCCAGTGGCTTCTGAAATGCCGATGTCTCCCCCCCCATGGGTGCACGGTCGGATAAAGCAGAGCCTGAGAACTGACTGCTGACAGCCGGGAGTCGTTTCTTATTCTCCGCACTCGGATGTTTCCCTATTTTCCTGCATGAACTGCCTTACAGCAAACattagggggggggggaaatacactaaatgttaaaaagaagaaaaactacAGAGAACATGAAGGAGGAGCTTAACTTggaacttgttttattttttcttctacggGCTGAACCAAGCTTTGGAGGGAAATTAAGGTATTCATATAGAAGTTAGCCATTGTGGCTCCACGACAGTATTGTTCGCTCAACGGCACATCCTTTTTGAGAGGCTCAGAGATTCTCTTCTGTATGAGCCTGGCATCTTTCTTTGCAGGTTTTTGGTACTTTGGGTTTAAACTGTGAAATGGGCGCCATTGTGGCTCCAATTCGGTACACGTTCTAAACTGTAGCGCAGCTTGAGCCGAAGTGACAGACACGGAAAACAAAAAGGGGGTGCACAGGAAAAAGTGTATATTGGAAACGTTGTATgtgtcccccctccccctcaagGAGCCAGAAACTCTGCAACAGGTGCCGTTTCGGCTCCATTTTGGCACCATGTTCTGAAGGAGCACCACTTGAGCCAAGATGGTGGACCAGAAGCACTCGGTTTCATAACTGCCTGTTACGGTATTTCAAGCTAACTCTTCATCACTGTATattctgcttctaacacatgagGCAAACACCATCTTGGCTCTGACACAGGGTGGGCACCCTTTCCAGATCTATAGAGGACTTGGAACCAACATGGTGGATGTTAGGACTGGGTTTAACCATCATCCTGTTACCATAGCTATCTATACTCTGCTGCCTGACAGCCAAGCACAGCACTGGGAGAGTTTAGTCAATTATCTGATGCGTTGGACCATAAAAATCTCTATTCTATGAGTTCAGCCAGTACATCCCCcttacagtacacagtacacaccACAGAAGGAAATTACTTCACAAGTAGTTACATTAAGTCGCATTAAGCTGTACCTCCCACACATAAAAACTCAGATATAAGAAGCCCATCTGTTAAAGAGACTCTCATCATGGGGTATGATATTAAATGAAGGAATATTTGCACCTAATTGAGACGCTTCTGAGAAATAACAGGTTTTGATAAGCAATCCAAAAAGTAGCAAGCTCAGTGATTTTCTGAGATAAATGTATTACTCCTTGCAGTGTttgtggattaaattaattaatttgggttttatttaatgtgttttttgccTGTGAAACAATAGAAATCTTGGTTAAATcctaaaacaaaccattttagTTTCTGTTTCCAGTGGATTTATACACTCAAGAACAAAACCGATATAACAGATCTGCCATCTTTCTGCTGGGGCAATATTTTTATCTTGCAACGTGactacttttacattttcatcaagcaagcacatttttttttcttttctgaaataaacagGCATTACACAGGGATGTTTGACAGGGAACAAACTAGAATAATAATCTGAGGTTTCTGCCTACAGGAAACCAAACAATATTTCTCTATAGACCTGCCTTGTCAGTCTGGAGATTGTACAGGCAGTTTTGCtgatagagaaaaacaaatgtgtacagGGGAAGGGAGTTTAGACAGGATATGGGGTTGAGGGCTGTGGCACTGTGTATGTTGCCTGGCTGTGTCCTTGGCTGGTGGAAAAAACTTCCAGAAAAGAGGCTGAGGATCAGTTGCCTCCTGTTTCATCGCACTGGCATCAGCAGGCTGCGCTCGTAAAGACTAGAGCAGGTCCTGCAAGTCCAAGATGAGGAAGTTCACAGttggggaacaaaaaaaaaaacataaataaatgagaactCCACAACAGCCAGAGATTGACGGACATGGATTTCAAGTCGTAATGGAAGTGTGTCATTGCCTTGCTGTTGCCTCTTGTCTGTTACAGTCAGGaatgttttaatgatgatgTAGCAGCATAGCAAGTAAAAGCTGCTGAAACCGCACACCTTCTCTTTTTCGTCCCTGCTCCAGTGAATTTATTCCTGTTGTctaaaggtttttatttgtttagttttttaagcaATCTGTTAACTTCAAATGGAATGGCTGCCTTTGGGACTGTGGGGAGTAAAGCACTCAATCTGTCTGAAGATGCAGGTCCTGGAACAGTGAGAACGTTGGTTCTGGTTAACATCCACGTGCAATCCACAGGTTCACACAACCAGCTGTTCACATTGCTTTCATGCCTTCTGGCTATTACcattcacttttctttcttatgcttcacattcatgttttttgcGGAAAAACTGCCTTGTGTTCTGAAAAGATTCGGCGGTCATTTGTTGCGGATGGAAAAAACATAAACCGATGCCAAAAGTTCCAACATCCGACATCTCAAAACCCAGACGAAGAAGGTGATACTGTATCTGGAGCAGCAGAACAATGCCCACAGTGTCACGCAAGATCTCCTGCTGAGCGGCGGTTTAAATCACAGCCAGTGAGGTTGGACTTGTACAACCTGGATCCTGAAACGGCAATATGAAGGAAATTTGAAGCCAATGGGGTTCCCTCTATCGTTCTGTGTTGTAATCCAGCGTCATCACAGTGCTTTTCCCGATTCTGCTGAAACGTCTGAATGTTTGTTGAATGcgcccacccacc

Function

GO: NA

KEGG:

id description
K12331 ARHGEF11; Rho guanine nucleotide exchange factor 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168209 lncRNA upstream 2223 8802523 ~ 8802878 (+) True G134068
TU168168 lncRNA upstream 101133 8703749 ~ 8703968 (+) True G134035
TU168167 lncRNA upstream 102503 8702349 ~ 8702598 (+) True G134034
TU168166 lncRNA upstream 104483 8699411 ~ 8700618 (+) True G134033
TU168146 lncRNA upstream 177918 8624218 ~ 8627183 (+) True G134019
TU168230 lncRNA downstream 48966 8888717 ~ 8888946 (+) True G134084
TU168296 lncRNA downstream 354811 9194562 ~ 9195917 (+) True G134141
TU168335 lncRNA downstream 441134 9280885 ~ 9309931 (+) False AMCG00012043
TU168426 lncRNA downstream 561703 9401454 ~ 9414917 (+) True G134222
TU168454 lncRNA downstream 694563 9534314 ~ 9538974 (+) True G134236
AMCG00012014 mRNA upstream 74160 8726823 ~ 8730941 (+) True AMCG00012014
AMCG00012015 mRNA upstream 106654 8678904 ~ 8698447 (+) True AMCG00012015
AMCG00012016 mRNA upstream 134277 8670489 ~ 8670824 (+) True AMCG00012016
AMCG00012011 mRNA upstream 203225 8595016 ~ 8601876 (+) True AMCG00012011
AMCG00012010 mRNA upstream 217120 8587130 ~ 8587981 (+) True AMCG00012010
AMCG00012023 mRNA downstream 8575 8848326 ~ 8866791 (+) True AMCG00012023
AMCG00012022 mRNA downstream 43878 8883629 ~ 8885897 (+) True AMCG00012022
AMCG00012024 mRNA downstream 62545 8902296 ~ 8910971 (+) True AMCG00012024
AMCG00012021 mRNA downstream 82157 8921908 ~ 8928713 (+) True AMCG00012021
AMCG00012025 mRNA downstream 99667 8939418 ~ 8951857 (+) True AMCG00012025
TU168082 other upstream 241887 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 286075 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 418004 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 750080 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 772492 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 811598 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 816606 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 1013139 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 1096175 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 1194435 10034186 ~ 10034693 (+) True G134357

Expression Profile