RNA id: AMCG00012023


Basic Information

Item Value
RNA id AMCG00012023
length 2252
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00012023
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8848326 ~ 8866791 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGTGAAATGTTAAGAATGGTTAAAGGACAACACCGCTGCGATGGGAACTTGGAAATCTTTAGGAATGGAAAGTGGGGTCGAGTTTGTTATGATGGATGGCAGAGAGCTAGGGGTGAAGTTATATGTAAGCAGATGAATTGTGGAATTTATACAGGTAGTTTCCACAACCGCAATGATCTGAGAAATATAGTGCTGACTGGAGTTAAATGTGCAGGAACAGAGGCAGCCCTGCAAGACTGTAAATCTGATGCAGTTGTTTCAAAATGCTCAGCTGTTTCTACAAGAGTGATATGCAATGGAGACACAGTGCGACTCTCTGGGGGGGGCTGCAGAGGGCGATTGGAGGTGAATCGTGGGGGCACCTATAAAACAGTGTGTCCTCAGTCTGTGGACTCCAGAGACGCAGACGTGGTCTGTAGAGAGCTGGGCTGTGGAGTGTCTGGAGCTGTGCTGGGGGGGGCCATGTTCGGACAGGGGACTGGGCCCATATGGGCCGATGAGATTCAGTGTGGAGGCGTTGAGGAAAAACTGTCCTACTGTCCCgagaagaaaagaaaccagCAGAACTGCACACACGCTGCTGACGTCAGCATTGTCTGCTTCGGCTACACTGACTTCAGGCTGGTGAACGGTCCTGACCGCTGCTCAGGCAGATTGGTGATGAAGTACGGTGGCCAGTGGGGGACAGTCTGTGACCGTGACTGGGACCTCCGAGACGCCACTGTTCTCTGCCAGCAGCTGCAGTGTGGCCATGCTGAGGCAGTCCTGGGCCCGGACAGATTTGGACAGGGCAGCGGTTCTGTTTTCACTGATGTATTTGACTGTGAGGGCACTGAGACCGCGCTGGGACAGTGCCCCATCTCCCCATGGACTCACAGCACCTGCACCAATAGGAGTGATCTGGGCGTGGTCTGTTCCAGAGCGGTGGGGTCCGTCAGGCTGCTGGGCGGAGAGAGCCGCTGTGAGGGCCGGGTGGAGGTGTTCTACAGCGGCTCCTGGGGGCGGCTGCAGGGCCAGTCTGGGGTCGGCGCTGTGGCCTCGGTGCTCTGCAGACAGCTGGACTGTGGCGCCGCCGTACAGACCACCAGCTCCTCTCGCTACGGGCCGGGCCGCTCTGAGGTGTGTCTCACGGGGCTCCGCTGCTCCGGGAACGAGACTCACCTGCAGAACTGCAGCCGCCCCCAGACAGAGACCTGCGGCTCCGGGAGTGACGTGGGAGTGCTGTGCGAgaAGCACATGGCTCTCCAGCTGGTGGGGGGCGAGGGCCCATGTGCCGGGAGGCTGGAGGTGTATCACAGGGGCTCCTGGGGGACGGTGTGTGATGACTCCTGGGACCTGGCCGATGCTCAGGTGGTGTGCCGGCAGCTCCAGTGTGGGACGGCACTCACCGCCACAGCACCGGGCTCCTTCGGCCAGGGAGAGGGGCCCATCTGGCTGGATGAGGTGCGCTGTGAGGGGAACGAGTCGTCTCTGTGGGACTGTCCTGCCAGACCCTGGGAGCAACACGACTGCAGCCACAAAGAGGACGTGGCCATCGTGTGCTCGGTGATGCAGAGTATACGGCTCTCTTGGGGCCACAGTAACTGCTCTGGTCGGGTGGAGGTGCTGTTCAGGGGTGTTTGGGGGTCGGTGTGCGATGACTCCTGGGACCTGAGGGATGCCCAAGTGGTGTGCAGACAGCTGGGCTGTGGGGAGGCAGAGAGCACCGTGGGGGAGGCAGCGTGGGAGGGGAGCGGCACTGTGTGGCTGGACGAGGTGAACTGCAGGGGCAGTGAGCTCTACCTGTGGGACTGTGAGCACCCGGCGCCAGGGCTGAGCCGCTGCCAGAGACAGAGACGGGCAGCAGTGCGCTGTGCTGagacagacaggctgcGGCTCTACGGGGGCCACAGTAACTGCTCTGGCCGGGTGGAGGTGCTGTTCTGGGGCACCTGGGGGTCGGTGTGTGATGACTCCTGGGACCTGAGGGATGCTCAGGTGGTGTGCAGACAGCTGGGCTGTGGGGAGGCAGAGAGCGCTGTGGGGGGGGCGGCGTGGGGGGAGGGGAACAGCACTGTGTGGCTGGACGAGGTGAACTGCAGGGGCAGCGAGCTCCACCTGTGGGACTGTGAGCACCCGGCGCTGGGACAGAGCGACTGCCAGCACAAGGAGGACGCCGGAGTCAACTGTGCCAGTGAGTCTGATACGGCCCTCAGCAGCTTCACTGTACAGGACTCCTATGTGATTTATATGTCTCAGTATCCCAGTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168209 lncRNA upstream 45448 8802523 ~ 8802878 (+) True G134068
TU168168 lncRNA upstream 144358 8703749 ~ 8703968 (+) True G134035
TU168167 lncRNA upstream 145728 8702349 ~ 8702598 (+) True G134034
TU168166 lncRNA upstream 147708 8699411 ~ 8700618 (+) True G134033
TU168146 lncRNA upstream 221143 8624218 ~ 8627183 (+) True G134019
TU168230 lncRNA downstream 21926 8888717 ~ 8888946 (+) True G134084
TU168296 lncRNA downstream 327771 9194562 ~ 9195917 (+) True G134141
TU168335 lncRNA downstream 414094 9280885 ~ 9309931 (+) False AMCG00012043
TU168426 lncRNA downstream 534663 9401454 ~ 9414917 (+) True G134222
TU168454 lncRNA downstream 667523 9534314 ~ 9538974 (+) True G134236
AMCG00012019 mRNA upstream 8575 8805101 ~ 8839751 (+) True AMCG00012019
AMCG00012014 mRNA upstream 117385 8726823 ~ 8730941 (+) True AMCG00012014
AMCG00012015 mRNA upstream 149879 8678904 ~ 8698447 (+) True AMCG00012015
AMCG00012016 mRNA upstream 177502 8670489 ~ 8670824 (+) True AMCG00012016
AMCG00012011 mRNA upstream 246450 8595016 ~ 8601876 (+) True AMCG00012011
AMCG00012022 mRNA downstream 16838 8883629 ~ 8885897 (+) True AMCG00012022
AMCG00012024 mRNA downstream 35505 8902296 ~ 8910971 (+) True AMCG00012024
AMCG00012021 mRNA downstream 55117 8921908 ~ 8928713 (+) True AMCG00012021
AMCG00012025 mRNA downstream 72627 8939418 ~ 8951857 (+) True AMCG00012025
AMCG00012026 mRNA downstream 85073 8951864 ~ 8956717 (+) True AMCG00012026
TU168082 other upstream 285112 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 329300 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 461229 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 793305 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 815717 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 784558 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 789566 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 986099 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 1069135 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 1167395 10034186 ~ 10034693 (+) True G134357

Expression Profile