RNA id: AMCG00012024



Basic Information


Item Value
RNA id AMCG00012024
length 930
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00012024
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8902296 ~ 8910971 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGCTGCCAACATGTAAGACTTGTGGATCATGGGAACCGCTGTGATGGAAGAGTGGAAGTGTATAAAGACGGACAGTGGGGCACAGTGTGTGATATTGAGTATCACGAAAGCACTTATGAAGTAGTGTGTAATGAGCTCAACTGTGGGACTTTTGTAGACGCTCCCTATTCCCCTGCAAAGTCAGGACCCATCCTGTTGAGTGGGGTTCAGTGCAGTGGAACAGAGTCGGCTCTACTGGACTGTCAATCTGACCCCCAGGTCTCAACATCCTGCACTCATGATAATGACCTCAGAGTGGTTTGTTCAGGATGGAAAGTGCGTCTTACACTGAGTCGAAGTCAGGGGCGGTTGGAGGTGAACCATGGCGAGAGCTGGAGAACAGTGTGCTCCCAGTCTATTGACTCCACAGTCGCAGACGTGGTCTGCAGAGACCTGAGCTGTGGATATTCAAAGGCTGTGCTGAGAGGAGCCCACTTTGGAGAGGGGACTGGGCCCATATGGGCCGATGAGATCCAGTGTCAGGGCAATGAGAGAAAACTGTCTGATTGTCCCGTCAGGAAGAGAAATCAACACAACTGCACACATGCTGATGATGTCGGCATTATCTGCTCTGGAGACACAGTGCGGCTCTCTGGGGGGGGCTGCAGAGGGCGATTGGAGGTGAATCGTGGGGGCACCTATAAAACAGTGTGTCCTCAGTCTGTGGACTCCAGAGACGCAGACGTGGTCTGTAGAGAGCTGGGCTGTGGAGTGTCTGGAGCTGTGCTGGGGGGGGGCGTGTTTGGAGAGGGGACTGGATCCATATGGGCCGATGAGATTCAGTGCTGGGGCAATGAGGAAAAACTGTCCCACTGTCCCGTCAAGAAAAGAAACCAGCACAACTGCACACACGCTGATGACATCAGTATCGTCTGCTTCAGtcagtaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168230 lncRNA upstream 13350 8888717 ~ 8888946 (+) True G134084
TU168209 lncRNA upstream 99418 8802523 ~ 8802878 (+) True G134068
TU168168 lncRNA upstream 198328 8703749 ~ 8703968 (+) True G134035
TU168167 lncRNA upstream 199698 8702349 ~ 8702598 (+) True G134034
TU168166 lncRNA upstream 201678 8699411 ~ 8700618 (+) True G134033
TU168296 lncRNA downstream 283591 9194562 ~ 9195917 (+) True G134141
TU168335 lncRNA downstream 369914 9280885 ~ 9309931 (+) False AMCG00012043
TU168426 lncRNA downstream 490483 9401454 ~ 9414917 (+) True G134222
TU168454 lncRNA downstream 623343 9534314 ~ 9538974 (+) True G134236
TU168453 lncRNA downstream 623374 9534345 ~ 9538864 (+) False G134236
AMCG00012022 mRNA upstream 16399 8883629 ~ 8885897 (+) True AMCG00012022
AMCG00012023 mRNA upstream 35505 8848326 ~ 8866791 (+) True AMCG00012023
AMCG00012019 mRNA upstream 62545 8805101 ~ 8839751 (+) True AMCG00012019
AMCG00012014 mRNA upstream 171355 8726823 ~ 8730941 (+) True AMCG00012014
AMCG00012015 mRNA upstream 203849 8678904 ~ 8698447 (+) True AMCG00012015
AMCG00012021 mRNA downstream 10937 8921908 ~ 8928713 (+) True AMCG00012021
AMCG00012025 mRNA downstream 28447 8939418 ~ 8951857 (+) True AMCG00012025
AMCG00012026 mRNA downstream 40893 8951864 ~ 8956717 (+) True AMCG00012026
AMCG00012030 mRNA downstream 59135 8970106 ~ 8990117 (+) True AMCG00012030
AMCG00012032 mRNA downstream 79425 8990396 ~ 8995174 (+) True AMCG00012032
TU168082 other upstream 339082 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 383270 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 515199 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 847275 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 869687 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 740378 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 745386 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 941919 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 1024955 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 1123215 10034186 ~ 10034693 (+) True G134357

Expression Profile