RNA id: AMCG00012029



Basic Information


Item Value
RNA id AMCG00012029
length 597
RNA type mRNA
GC content 0.65
exon number 3
gene id AMCG00012029
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9076379 ~ 9077758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAAGTACGGTGGCCAGTGGGGGACAGTCTGTGACCGTGGCTGGGACCTCCGAGACGCCACAGTTCTCTGCCAGCAGCTGCAGTGTGGCCGTGCTGAGGCAGTCCTGGGCCCGGACAGATTTGGACAGGGCAATGGGTCTGAGTTCACTGATGTATTCGACTGTGAGGGCACTGAGACCGCGCTGGGACAGTGCCCCATCTCCCCATGGACTCACAGCACCTGCACCAATAGGAGCGATCTGGGCGTGATCTGTTCCAGCTGCTGGGCGGAGAGAGCCGCTGTGAGGGCCGGGTGGAGGTGTTCATGGGGGCGGCTGCAGGGCCAGTCTGGGGTTGGCGCTGTGGCCTCGGTGCTCTGCAGACAGCTGGACTGTGGCGCCGCCGTACAGAGCACCAGCTCCTCTCGCTACGGGCCGGGTTGCTCTGAGGTGTGTCTCACGGGGCTCCGCAGCTCCGGGAACGAGACTCACCTGCAGAACTGCAGCCGCCCCCAGACAGAGACCTGCGGCTCCGGGAGTGACGTGGGAGTGCTGTGTGAgaAGCACAGGGCTCTTCGGCTGGTGGGGGGAGAGGGCCCCTGTGCCGGGAGGCTGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168230 lncRNA upstream 187433 8888717 ~ 8888946 (+) True G134084
TU168209 lncRNA upstream 273501 8802523 ~ 8802878 (+) True G134068
TU168168 lncRNA upstream 372411 8703749 ~ 8703968 (+) True G134035
TU168167 lncRNA upstream 373781 8702349 ~ 8702598 (+) True G134034
TU168166 lncRNA upstream 375761 8699411 ~ 8700618 (+) True G134033
TU168296 lncRNA downstream 116804 9194562 ~ 9195917 (+) True G134141
TU168335 lncRNA downstream 203127 9280885 ~ 9309931 (+) False AMCG00012043
TU168426 lncRNA downstream 323696 9401454 ~ 9414917 (+) True G134222
TU168454 lncRNA downstream 456556 9534314 ~ 9538974 (+) True G134236
TU168453 lncRNA downstream 456587 9534345 ~ 9538864 (+) False G134236
AMCG00012031 mRNA upstream 12774 9042798 ~ 9063605 (+) True AMCG00012031
AMCG00012028 mRNA upstream 53710 9022023 ~ 9022669 (+) True AMCG00012028
AMCG00012032 mRNA upstream 81205 8990396 ~ 8995174 (+) True AMCG00012032
AMCG00012030 mRNA upstream 86262 8970106 ~ 8990117 (+) True AMCG00012030
AMCG00012026 mRNA upstream 119662 8951864 ~ 8956717 (+) True AMCG00012026
AMCG00012038 mRNA downstream 36882 9114640 ~ 9125053 (+) True AMCG00012038
AMCG00012037 mRNA downstream 47343 9125101 ~ 9145534 (+) True AMCG00012037
AMCG00012036 mRNA downstream 83060 9160818 ~ 9164647 (+) True AMCG00012036
AMCG00012035 mRNA downstream 91160 9168918 ~ 9177896 (+) True AMCG00012035
AMCG00012042 mRNA downstream 118239 9195997 ~ 9203737 (+) True AMCG00012042
TU168082 other upstream 513165 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 557353 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 689282 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 1021358 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 1043770 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 573591 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 578599 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 775132 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 858168 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 956428 10034186 ~ 10034693 (+) True G134357

Expression Profile