RNA id: AMCG00012033


Basic Information

Item Value
RNA id AMCG00012033
length 1278
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00012033
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9000702 ~ 9002383 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGTAACAGAAACAAGACGTATACATTGATCAAGCAGGCAAAAAGCTGGGCTGCATCTCGTGAATACTGCAGGCAGAACTACAATGACCTGGCCTGCatagagagccagagagagaatGAAGAAGTGATGAAGAGTGGGCAGGGCACAGACTTCTGGATAGGCCTGTTTAACGACCCCTGGAAGTGGTCAGATGGGAGCGTCTCGGCGTTCCGGGACTGGGACAACCAAGAACCGAACAACTGGGCGGACCCAGAATATTGTGTGGTTCTGAACGGTGGTTGGATAGATGTCCATTGTTCTGACATTAATGAGGTCTTGTGCTGTAAAGGGCAGGCGCTCTGCAGGAACCAGTATGGCTCTGACCTGCCCACTATTTACAATTACCAGCAGGTTGTGCAGATGAAGGCTCAATATTTGTCTTCTCGGTACTGGATCGGGCTATACCGTGATAGAGAGAACTGGCAGTGGGTCAATGGAGAGACAGTTCTCTACTCCAACTGGAAGACATCTCACTTCTGTGCCTCAGCTGATTCAGAGGGATACTGGCAGGATAGAGACTGTAATGACCAGCTACCATTCATGTGTTACAAGGAATACAGCAATGGCACCCAGACATACACGCTGCTTCAGACAATGCAAACCTGGGCTGCAGCTCAAGGACACTGCAGGCAGCTTTACACTGACCTGGTCTCCATACAGAACCAGAGCGAGAATGAAGCAGTGATGGAGAGAGGGCAGGGCAAAGCCTTCTGGATAGGCCTGTTCAACGACCCCTGGAAGTGGTCCGATGGGAGCAAGTTGTTATTTCGAGACTGGAACTCGCCACAATCACTCTCAAATGAATGTGCAGCTGTATCTTCCACTTCAAATGGCAAATGGTTGCATTTGGCCTGCCTGACAAaaatttcatttgtttgttatgAAGAAGTGCAGAACATCACCCAGGTGAAGCTGAACATGATGTGGGAGGAGGCGCGGGACTACTGCCGATCTCACCACACTGACCTCACCAGCATTGTCTCGGAGAGGGACCAGTTCTACGCGGTCTCGACATCTGCAGATTCACAGACGTCCCACGTGTGGCTGGGCCTGCGACTCAGCCTCGTATCGGGCTCCTGGTTCTGGGTGAACAGGGAGCCCCTGGTGTTTAACAACGGGACGAAGGGAGGATACGGCCAGTGCCCCAAGTCCAGCTACTGCGGAGCCCTGTCTGCCGGGGACGGCGGCTGGGCTGGGAGATACTGTGGTGAGAGGATGAACTTCATGTGCTACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168210 lncRNA downstream 197716 8802407 ~ 8802986 (-) True G134069
TU168111 lncRNA downstream 517045 8430988 ~ 8483657 (-) True G133997
TU168002 lncRNA downstream 812009 8188289 ~ 8188693 (-) True G133915
TU167983 lncRNA downstream 940826 8047229 ~ 8059876 (-) False AMCG00011995
TU167971 lncRNA downstream 948457 8004018 ~ 8052245 (-) True G133891
TU168298 lncRNA upstream 152053 9154436 ~ 9191292 (-) True G134143
TU168438 lncRNA upstream 411933 9414316 ~ 9416458 (-) True G134226
TU168546 lncRNA upstream 653973 9656356 ~ 9656645 (-) True G134298
TU168676 lncRNA upstream 789927 9792310 ~ 9799446 (-) True G134396
TU168678 lncRNA upstream 807415 9809798 ~ 10182061 (-) False G134397
AMCG00012027 mRNA downstream 72064 8907682 ~ 8928638 (-) True AMCG00012027
AMCG00012020 mRNA downstream 195372 8796140 ~ 8805330 (-) True AMCG00012020
AMCG00012018 mRNA downstream 252629 8739577 ~ 8748073 (-) True AMCG00012018
AMCG00012017 mRNA downstream 289931 8703782 ~ 8710771 (-) True AMCG00012017
AMCG00012012 mRNA downstream 373027 8626155 ~ 8627675 (-) True AMCG00012012
AMCG00012034 mRNA upstream 60188 9062571 ~ 9072513 (-) True AMCG00012034
AMCG00012040 mRNA upstream 86469 9088852 ~ 9118322 (-) True AMCG00012040
AMCG00012039 mRNA upstream 143744 9146127 ~ 9149395 (-) True AMCG00012039
AMCG00012045 mRNA upstream 176084 9178467 ~ 9195709 (-) True AMCG00012045
AMCG00012051 mRNA upstream 289100 9291483 ~ 9297574 (-) True AMCG00012051
TU168169 other downstream 299061 8699411 ~ 8701641 (-) True G134036
TU168124 other downstream 435438 8489200 ~ 8565264 (-) True G134005
TU167732 other downstream 1443994 7545355 ~ 7556708 (-) True G133715
TU167720 other downstream 1451050 7509749 ~ 7549652 (-) False G133712
TU168269 other upstream 138441 9140824 ~ 9145295 (-) True G134119
TU168464 other upstream 532885 9535268 ~ 9538892 (-) True G134244
TU168522 other upstream 610527 9612910 ~ 9625601 (-) False AMCG00012058
TU168523 other upstream 610527 9612910 ~ 9625601 (-) False AMCG00012058
TU168524 other upstream 610527 9612910 ~ 9625601 (-) False AMCG00012058

Expression Profile