RNA id: AMCG00012035


Basic Information

Item Value
RNA id AMCG00012035
length 2613
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00012035
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9168918 ~ 9177896 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCAACTTGACAAGATGGCGGCGGCAGCGGACGAGCATGATAATGAGCTGGACGACTTGTTAGACAGTGCTTTGGGTGATTTTGAGAAGACCAAGCCCCCCGCAGCAGCCCCCAGCTCTGAGGGCAGCTCGGCTGCAGCGTCGCCCAATGCCCCCGGCACCAAGGAGAAGCCGCCTCCTTTGCTGGAGGACAACCAGTTCTTTGAGTCTCTGTTCGAGGGCGAGTTGGCCAACCAAGCGCGCGAGGAGTTCGACAAGGCAATGAAGGAGCTGGCGCAGGAGGAGCCGCATCTGGTGGAGCAGTTTCACAAGCTTTCCGAGGCGGCCGGCAAAGTCGGAACGGACGCAGATTCACAGAAGGAGTTCACTTCCTGTCTGAAGGATACTCTCAGCGGATTGGCTAAGAATGCCGATGACTTGCAGAACTCTGGATTGGCCGGTGAAGACCTCGCCAAGGCTCTAGAAGGCCTGGGATTGGAGGAGGGCGGTGAAGGGGGTGGCGACGATGCCAACATTCTCCCCATCATGCAGTCCATTATGCAGAACCTGTTGTCCAAGGAGGTGCTGTACCCCTCCCTCAAAGAGATCACGGATAAGCAGCACAGGCTGATGGGAGAGATCTGCCAGCAGTTCGAGCGAGACGGCGATCAGGGATGCTTCGAGAACGTGCTGGAGCTGATGCAACAGCCTCCTGGCATGAACTTTGATCTGGAGTCCCTCAACCTCCCGGGATCTTCAGCAGGGGGCGAGCAGTGCACCATCATGTGATCCCTACTGGACGGCCAACGAGGAACGCAAAAGTGAGGATCGGCGCCTCTTTCGATGAGCTCCTTTGGCTTGTTTGAAGGGGAAATGGTTAAAGTAGACCAGCATTAACTGTGGCCACCTTTCACAGCCGCCTTCCTTTCCCCGTGTCACATTTGCAGTTTCCTTCTATTCACCACAGTCGAATACCTCGTATGTGAAACCAGAACCCCCAGTGTGTAGTTCAGACGTGAGCAGAACCTCTTCTGTGGAGACGACCCCGAGGTGTTCCTGGGAAATGGAGTTCTCGAGAGTCtcgttttgtgtgttttgcgtGGCAGGCCTCAAGTCACCCACATTTCCCAACATCCTGCCACGTAGCACGGGCTTCTGGGAGCTGGAGTCCCTTTAAGTCTCCCTGCATCGACACAAGAGATTTAGGTCACGGAAATCTGGAAAACACTGCAGCggttttatatgcattttattagaTCGGATGTGACACGATACAGTTATCAGAGTCCGTAAAGGCATCTGAAAACATAGTTAATACAGAGGGGTGATTGCCAGGACAGGTTTATAAACAATGGGACTTCTCTATCCTCACTACTCTTGGGGTGAGGCAGTGAGGCATTAGGACTTTACATTGAGCTATATGGGCAGTTCTGTATTTTTGAATTTGGGGGGGGGAGTTTAACAATTCTGTATTCAGGAACACTAAAGTACTAAGGGCCCTATGAACTGTTAGTTTGCCACTCTAGCTATTCTAATGTGTAGGAGCTGTGTGAGATTTGATCTGATATAGGCTACAGTTTTTCATCTAATGGTTtggtttttttattattattacacacaaCACTAGACTTGgcgattgatttatttatctttttgatCTGGGGAAATCTATTTTTGCAGTGTAATTTTATAATTGTgcctaaaatgaaataattacaaacaaGTGTTTaatcctgtttaaaaaaaaaaaaaagttaatgttcTGCTGTTAACTATTTGGAATAGTAAACAGCGGAACTGGGTCACTGTCAGAATCATTAATGGTGAcctgttttaaaaagtaaaacaacagCATCGAGGGCAGGAACAGTCAGACTACTTTGGTGTTCATGGAAAGATCTTGGTGTCAGCTGAAACCAGTTCAGGCTTGCATGTGTGGTAACTAATGCTCATAACGGCTAGTTGAGTTTAGGGAGATTGATTTAACCCTTTACCTTAGACTTTAATTTAGCACTGTGTACTACTTTATCAGTAGATTAAAGCACttcatttttgttgtggttttcagCTAAAAAGTTTTTAAGTTGCCTCTTAAACTGCACTGCCTTACATGTTTAATGACATGCTTTCTAAAATGTGGACAATGAATGATTTAGCGAGACATTTGTAAGGATTTATACAGAAGGATCCTGTAACTTTTGTAttccaaaacattaaatattgtttcagtGCTTTATCATATATGCTAGGAAGATTTAAAACACCGAAGTGAGTTTCCCGTGGTCAAGTGGTCAGAGCCAACGGTGCCCAAAAGTATTTCCGCAATGTGACAAAGGAAATAGACGGTGTAACTGAAAAGTTTCAAACAATTCCTTGAGTCTTAAATGGCTCTAAGAAACTTAAGATCCTGtagtcttttctgtttttttttttttttttaatttgtattctttgGAATTGATGTAAAGTTTAGCTCTGTAGCGAGGACCCATTGTATGCACTTCTGACTGGTTATCCCAACACTGTAAGAATTGCTCAAATAAATGGTTTACAATGCAGTGCTGGAACATAGTGTCCCATTTAATTTCTTGTGTTCCGGAACACTCCAAAGAGGGGAAATCAAACTCTTTTTTT

Function

GO: NA

KEGG:

id description
K13337 PEX19; peroxin-19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168230 lncRNA upstream 279972 8888717 ~ 8888946 (+) True G134084
TU168209 lncRNA upstream 366040 8802523 ~ 8802878 (+) True G134068
TU168168 lncRNA upstream 464950 8703749 ~ 8703968 (+) True G134035
TU168167 lncRNA upstream 466320 8702349 ~ 8702598 (+) True G134034
TU168166 lncRNA upstream 468300 8699411 ~ 8700618 (+) True G134033
TU168296 lncRNA downstream 16666 9194562 ~ 9195917 (+) True G134141
TU168335 lncRNA downstream 102989 9280885 ~ 9309931 (+) False AMCG00012043
TU168426 lncRNA downstream 223558 9401454 ~ 9414917 (+) True G134222
TU168454 lncRNA downstream 356418 9534314 ~ 9538974 (+) True G134236
TU168453 lncRNA downstream 356449 9534345 ~ 9538864 (+) False G134236
AMCG00012036 mRNA upstream 4271 9160818 ~ 9164647 (+) True AMCG00012036
AMCG00012037 mRNA upstream 23384 9125101 ~ 9145534 (+) True AMCG00012037
AMCG00012038 mRNA upstream 43865 9114640 ~ 9125053 (+) True AMCG00012038
AMCG00012029 mRNA upstream 91160 9076379 ~ 9077758 (+) True AMCG00012029
AMCG00012031 mRNA upstream 105313 9042798 ~ 9063605 (+) True AMCG00012031
AMCG00012042 mRNA downstream 18101 9195997 ~ 9203737 (+) True AMCG00012042
AMCG00012041 mRNA downstream 45331 9223227 ~ 9237276 (+) True AMCG00012041
AMCG00012044 mRNA downstream 63793 9241689 ~ 9256200 (+) True AMCG00012044
AMCG00012046 mRNA downstream 87113 9265009 ~ 9265814 (+) True AMCG00012046
AMCG00012047 mRNA downstream 94178 9272074 ~ 9273616 (+) True AMCG00012047
TU168082 other upstream 605704 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 649892 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 781821 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 1113897 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 1136309 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 473453 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 478461 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 674994 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 758030 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 856290 10034186 ~ 10034693 (+) True G134357

Expression Profile