RNA id: AMCG00012037


Basic Information

Item Value
RNA id AMCG00012037
length 1749
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00012037
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9125101 ~ 9145534 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGCATTATCTGCTCTGGTGAGTCAGTTACTGTTACTGTCCTCTGGGAATTTCCCTAATATTGGATCTCAGACTGGGGAACTTAAAAATCCGTGTGATGGAAAAGTGGAAGTGTTGAAGAATGGACAGTGGGGGAGAGTTTGTCATGATGGTTGGATGGTTTACAAAGGGAGAGTTGTATGTGATCAGCTAAACTGTGGAGCTTATATGGGTTCTTCCTATGATTCTTCTGATTCCAGTCCCATTGACCTGAGTGGGGTTAAATGTAATGGAACACAGCCATCCCTACTACACTGCACTTCTGACCTGCAGGTGTCAAATTGCACTCAAGGAACCACTAGAGTACAATGTTCCGGAGACACAGTGCGGCTCTCTCGGTGGGTTTGCAGAGGGCGATTGGAGGTGAAACATGGGGGCACCTATAAAACAGTGTGTCCTCAGTCTGTGGACTCCAGAGATACAGATGTGGTCTGTAGAGAGCTAGGCTGTGGAGTGTCTGGAGCTGTGCTGGGGGGTGCTGTGTTCGGACAGGGGACTGGGCCCATATGGGCCGATGAGATTCAGTATGGAGGTGATGAGGGAAGTcctactgtaaaaataaaccagaacaactgcacacacactgatgaCtttacaCACTGGCATATTGTAATATTGGTGACTATTTTCTGTCTGTCCACTGTCTCCACTGTCTGCTGTTTAGGCTACACTGATTTCAGGCTGGTGAACGGTCCCGACCGCTGCTCAGGCAGAGTGGAGATGAAGTACGGTGGTCAGTGGGGGACAGTCTGTGACCATGGCTGGGATCTTCGGGACGCCACAGTTCTCTGCCAGCAGCTGCAGTGTGGCCATGCTGAGGCAGTCCTGGGCCCAGACAGATTTGGACAGGGAAACAAATCtgtgttcaattatatttttgactgTGAGGGCACTGAGACCACGCTGAGACAGTGCCCCATCTCCCCATGGACTCACAGCACCTGCATTAATAGGAGCGATCTGGGCGTGGTCTGTTCCAAGTTCAAGCAGCTCAGGCTGGTGAGTGAGCAGTTTGAATGTGCCGGACAAGTGGAGGTCTTTTATAACGGCACCTGGGGCAGTGTCTGCTCCAACCGCATGAGGGCTCACACTGCCACACTCATATGTCAGCAGCTCAGCTGTGGAGACAGTGTTTCCTTAGATAATGCTAACCATGTCCCGGGTCTGAAATGGTTGGATAACATTGAATGTACAAGGCACCACACATCTCTGTGGCAGTGTCCTTCCTCACCGTGGGGAGACGACAGCAACTGTGATGACAGAGATGTAGCTGAAATCATTTGCAGagAGCCCCCGAAGCCCAGGCCCAggcctcttcctcctcctcctcctcctcaggcTCAGCCAGGCCAGTCCAATCTGCTGATTGTCTGCGCCACTCTGGGGGCTCTGGTGTTCATGGCGGCCATCCTGGCTCTTGTGCAGATGCTGCGCTACAGAGCGCTGAAGAGAGAGTTCGCTCAGCTGGAGACGACCTCCGACCCCCTCCAGGACGGCCTCTATGAGGAGATCGACCACAAGCCCCACAGACAGGGAACGTACAGCCAGTACAGGGCAGCCAGTCTACCTGCCAGTGAGGATGACTATGACGATGTGAAAGAGGAGGAAGACGCCTCAGTACCAGaaataaagaaagagccCCCAGGAAAATCCTCTCCAGACTTGGACTACCATGGATATGAAGAGGTGGAAGAGCCTGAAtcatAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168230 lncRNA upstream 236155 8888717 ~ 8888946 (+) True G134084
TU168209 lncRNA upstream 322223 8802523 ~ 8802878 (+) True G134068
TU168168 lncRNA upstream 421133 8703749 ~ 8703968 (+) True G134035
TU168167 lncRNA upstream 422503 8702349 ~ 8702598 (+) True G134034
TU168166 lncRNA upstream 424483 8699411 ~ 8700618 (+) True G134033
TU168296 lncRNA downstream 49028 9194562 ~ 9195917 (+) True G134141
TU168335 lncRNA downstream 135351 9280885 ~ 9309931 (+) False AMCG00012043
TU168426 lncRNA downstream 255920 9401454 ~ 9414917 (+) True G134222
TU168454 lncRNA downstream 388780 9534314 ~ 9538974 (+) True G134236
TU168453 lncRNA downstream 388811 9534345 ~ 9538864 (+) False G134236
AMCG00012038 mRNA upstream 48 9114640 ~ 9125053 (+) True AMCG00012038
AMCG00012029 mRNA upstream 47343 9076379 ~ 9077758 (+) True AMCG00012029
AMCG00012031 mRNA upstream 61496 9042798 ~ 9063605 (+) True AMCG00012031
AMCG00012028 mRNA upstream 102432 9022023 ~ 9022669 (+) True AMCG00012028
AMCG00012032 mRNA upstream 129927 8990396 ~ 8995174 (+) True AMCG00012032
AMCG00012036 mRNA downstream 15284 9160818 ~ 9164647 (+) True AMCG00012036
AMCG00012035 mRNA downstream 23384 9168918 ~ 9177896 (+) True AMCG00012035
AMCG00012042 mRNA downstream 50463 9195997 ~ 9203737 (+) True AMCG00012042
AMCG00012041 mRNA downstream 77693 9223227 ~ 9237276 (+) True AMCG00012041
AMCG00012044 mRNA downstream 96155 9241689 ~ 9256200 (+) True AMCG00012044
TU168082 other upstream 561887 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 606075 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 738004 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 1070080 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 1092492 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 505815 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 510823 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 707356 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 790392 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 888652 10034186 ~ 10034693 (+) True G134357

Expression Profile