RNA id: AMCG00012044


Basic Information

Item Value
RNA id AMCG00012044
length 1458
RNA type mRNA
GC content 0.42
exon number 9
gene id AMCG00012044
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9241689 ~ 9256200 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttttacagtCAGAGCAGAATGACCACCGTTGTCCTGTTTCTGTTGGTGATTGCTATCCTACCGGagaaGATTGACACACCAGTAATGGTGGTGGACTCCAATTTCTCAAGCAGTAAAACCTGCAACATTTTGATCACATGCTCTGTGAAGGGAAAACTTTCATCTACCTTCATCTGCAATGATTCTCTGTGCAGAGAGGAGACTAGGAACAAGTCTGCTGCTGTGGTTATCAATGTCTCTGCAGTCGACAGCTTTTTTATGTGCAACGCCAGTAATCACGTCAGCTGGACCCACAGCTCACTAGGGAAGGAAAAGCTCTGTCCAAACACAGAGGGTATCAGTTCAACATATGCTACAGTACAGAACGATGGCCAGGAAAAAAATGCTAAGCTGCCTGAGACTCGGTATACTGTGGTGAGAAAAGACAGATTCATTTCACAGCAAAAAGGAGAGGACCCCACGATCATGGGCACTGAGATCCCAGCCATTGAGTTATATGGATTAAAAGGAGACTCTATTAATCTTGAAGTACAAAGTCATGAACAGTTACAGTTCAAAAGTATTTCATGGAAGTTTAACAAAGTCAACATAGTGGAATACAACACTAAACATGATGAGGTTGATTATCATGATACATACAAACCCAGGGTGGAGTTcagcaaggaaaataaatctctaaCCATCAGAAACCTTGAGGAGACAGACCATGGCCTTTACACAGCAGTAATGGTTAATAACGACAAGGTTGATGTAAATCTTGCAAAGTACAATTTATTCATTCAAGAGAAGATCGGCACAACAGAAATGGTAGTGAACTACAATTCGTCGAGCAGTGAAACCTGCAACGTCTCAATCACATGCTCTGTGAAGGGAAACTATTTATCCACCTTCATCTGCATCAATTATCTGTGCAGAGAGGAGGCTAGAAACTACAACAGGTCTGCTGCTCTGCTCATAGATGTCCACACAGACGGCAGCTTGTTTGTGTGCAACGCCAGTAATCGAGTCAGCTGGAGCCTCAGATCACTTTCTAAGGAAAAGCTCTGTGGGAAACAAAACCAGATCTTGACGGCCATAATCTTGGCTTGTGTCCTGTGCCTTACCCTGGTCATGGCCATCAGTGTTGTAATCAAAATCATTTTCTTCTGCAAGAAAGATTCAGATACAGaTTCTAAGGACATCAATTCAGTCTATGCTACAATAGAGAACACTGGCCAGGAATGGAATTTTAAGCTGCCTGAGACTTGGTATGACACAGTGAGAGCAGACATATTCACCTCACAGCACcaagaagataaataaataaatatagataaataaagagAGAGCACATAGATTTTACAATGGTGGGAGAATAGAAGAGCACTGGATCTCAGCACCTATTCACATGAGGGGAAGATCGGTTGATCCACTGAAATCTGGGTCTGAATCACAGAACAGTTTAAAGACTATATCT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168296 lncRNA upstream 45772 9194562 ~ 9195917 (+) True G134141
TU168230 lncRNA upstream 352743 8888717 ~ 8888946 (+) True G134084
TU168209 lncRNA upstream 438811 8802523 ~ 8802878 (+) True G134068
TU168168 lncRNA upstream 537721 8703749 ~ 8703968 (+) True G134035
TU168167 lncRNA upstream 539091 8702349 ~ 8702598 (+) True G134034
TU168335 lncRNA downstream 24685 9280885 ~ 9309931 (+) False AMCG00012043
TU168426 lncRNA downstream 145254 9401454 ~ 9414917 (+) True G134222
TU168454 lncRNA downstream 278114 9534314 ~ 9538974 (+) True G134236
TU168453 lncRNA downstream 278145 9534345 ~ 9538864 (+) False G134236
TU168499 lncRNA downstream 311080 9567280 ~ 9571718 (+) True G134259
AMCG00012041 mRNA upstream 4413 9223227 ~ 9237276 (+) True AMCG00012041
AMCG00012042 mRNA upstream 37952 9195997 ~ 9203737 (+) True AMCG00012042
AMCG00012035 mRNA upstream 63793 9168918 ~ 9177896 (+) True AMCG00012035
AMCG00012036 mRNA upstream 77042 9160818 ~ 9164647 (+) True AMCG00012036
AMCG00012037 mRNA upstream 96155 9125101 ~ 9145534 (+) True AMCG00012037
AMCG00012046 mRNA downstream 8809 9265009 ~ 9265814 (+) True AMCG00012046
AMCG00012047 mRNA downstream 15874 9272074 ~ 9273616 (+) True AMCG00012047
AMCG00012043 mRNA downstream 23788 9279988 ~ 9286206 (+) True AMCG00012043
AMCG00012048 mRNA downstream 49345 9305545 ~ 9307807 (+) True AMCG00012048
AMCG00012049 mRNA downstream 55222 9311422 ~ 9318636 (+) True AMCG00012049
TU168082 other upstream 678475 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 722663 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 854592 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 1186668 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 1209080 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 395149 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 400157 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 596690 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 679726 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 777986 10034186 ~ 10034693 (+) True G134357

Expression Profile