RNA id: AMCG00012049


Basic Information

Item Value
RNA id AMCG00012049
length 1952
RNA type mRNA
GC content 0.38
exon number 4
gene id AMCG00012049
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9311422 ~ 9318636 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaatatttaaattattgtaatagtattgttataatatttataataataataattattattattattattattcagcagCTGGTGATTGGTGGAAGCAGGAAGGGGAGAACATGTGCATTTGAAGCGATACAGTTCCCCAAATTTCTGCCATACAGCTTTACGTACTGCTCACTTGTCAAGTGACTTTACTTATCAAAatattactaataaaaataatgattatattcCATTTTATGTGGGTAACACATCTTTTATCGTTGTGGATTTTGgCTTCTTACAGCTCTGCAGAGACTCTCCAAACAATCCATGGGGTTTTAAATGGAACCATCATATTACCATCTGggatacagaaaaacacatttacccAGATCCAGTGGTCAACAGGTGGCAAGTTAATTGCCTTAGGAATTGGTGAAGAAGTCAATGTTAACAGATTACCTCGCTTTCGTGGTAGACTAAGTCTCTTCCAAGAAAATGGATCTTTGCAGATCAATAGAACAGAAATGGGAGATCAATCAGTTTACAGAGTTAAAGCAATCTATGAAGATGGAAATGAGTATAACAAAGAACTCCAACTTTTGGTATATGaaaagATCAATAAACCAAAACTGgaactgaagaaaaatgtttcCACCTTGGGAATCTGCAATATCTCTGTTACATGCTCCATGGGCATAGATGTTTTTTGCGCTGCTGACTGTGACAACACACAAGGTGCATTTCTCTGTTCTAAGTGTGATTACACTGACTCCAGTTTTTCTACATCACTCACTGTTACCAGCAACGGCAGCTCTATTGTGTGTACCAGCAGTAATCCAGTCAGTAAGGATTCAGATGTTCTTGTAAATGTCTGTCCACACCAAGACAAGGccaaagagcaaataaataaagttaagaCTAGAAAAGTAGGCTCCCATCAGAAGGATTCTCCAGAAGACTCCCATCAGAAGGATTCTCCAGAAGACTCCCATCAGAAGGATTCCCCATTAGACTCCCCTCGGAAGGATTCTCTAGAAGATTCTCTTCAGAAGGATTCTCCAGAAGACTCCCATCAGAAGCATTCTCCAGAAGACTCCCATCGGAAGGATTCTCTAGAAGATTCTCTTCAGAAGGATTCTCCAGAAGACTCCCATCAGAAGGATTCTCCAGTAGACTCCCATCAGAAGGATTCCCCATTAGACTCTCCTCAGAAGGATTCTCTAGAAGACTCTCTTCAGAAGGATTCTCCAGAAGATTAATGCTGTTTTCTCATATACAtatgaatgtacaaataatagaaTGTTGATAACATAACAAAAGATTGCAGACACGTGGCACtcgcctctgtccagcacaAGTTGTTGTTGCCCTAAAcactgtctcttggtttttgtaccctaattcaactgcttgacctcttgtcaccgagaaacagcagatttacttcaattaaggcagatCTAAAaaagattaggaatgctaagactttctcctctctctcacctgtcccgTGACTGACTTGGGTAACTCCTGAACACTtcctttgtctttttgtttctctacAACTGCTTAAGTACCTTTGTGTTCAGCTTCTGgccaccaattgacacctcactgactcCACCTCCAGAATCCCAAACTAggtcacatttatatattatagcctacatcagtgtttctcaacctGCACTTTCAGCTCTCAGTTATTTAAGCAAACCgtatttcctgttattttcagcTCTCATGTGTTGGTTGATAATTCCATTCAAGGTTTCAATGAAACAAGTGAGTGCTctgttagaacaaaaaccagcagacaccaGGAGAATCCCTGCCTACATTAAATGCTCAAACTTTATGAACTGTCTGTTGCATTTACTTAAGTAGCCAAATgtatgatatgcatatttatataaaatcaagtaaataataacaatacataatcaataaattaaattttatttcaaaacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168335 lncRNA upstream 1491 9280885 ~ 9309931 (+) False AMCG00012043
TU168296 lncRNA upstream 115505 9194562 ~ 9195917 (+) True G134141
TU168230 lncRNA upstream 422476 8888717 ~ 8888946 (+) True G134084
TU168209 lncRNA upstream 508544 8802523 ~ 8802878 (+) True G134068
TU168168 lncRNA upstream 607454 8703749 ~ 8703968 (+) True G134035
TU168426 lncRNA downstream 82818 9401454 ~ 9414917 (+) True G134222
TU168454 lncRNA downstream 215678 9534314 ~ 9538974 (+) True G134236
TU168453 lncRNA downstream 215709 9534345 ~ 9538864 (+) False G134236
TU168499 lncRNA downstream 248644 9567280 ~ 9571718 (+) True G134259
TU168528 lncRNA downstream 327390 9646026 ~ 9646444 (+) True G134284
AMCG00012048 mRNA upstream 3615 9305545 ~ 9307807 (+) True AMCG00012048
AMCG00012043 mRNA upstream 25216 9279988 ~ 9286206 (+) True AMCG00012043
AMCG00012047 mRNA upstream 37806 9272074 ~ 9273616 (+) True AMCG00012047
AMCG00012046 mRNA upstream 45608 9265009 ~ 9265814 (+) True AMCG00012046
AMCG00012044 mRNA upstream 55222 9241689 ~ 9256200 (+) True AMCG00012044
AMCG00012052 mRNA downstream 119691 9438327 ~ 9440627 (+) True AMCG00012052
AMCG00012055 mRNA downstream 190105 9508741 ~ 9534241 (+) True AMCG00012055
AMCG00012056 mRNA downstream 223378 9542014 ~ 9544985 (+) True AMCG00012056
AMCG00012067 mRNA downstream 316860 9635496 ~ 9643331 (+) True AMCG00012067
AMCG00012057 mRNA downstream 341113 9659749 ~ 9673361 (+) True AMCG00012057
TU168082 other upstream 748208 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 792396 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 924325 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 1256401 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 1278813 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 332713 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 337721 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 534254 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 617290 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 715550 10034186 ~ 10034693 (+) True G134357

Expression Profile