RNA id: TU168524


Basic Information

Item Value
RNA id TU168524
length 1138
RNA type TUCP
GC content 0.41
exon number 5
gene id AMCG00012058
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9612479 ~ 9626126 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGAAACAGTGTTCAGTTCATCGGATTAGGACACTTGTCTCTGCTGCAGCGACCGGGCGCTATAATCGGCACCACATCCAGAGAAGATGCCAGCCTTCAGGAAAGCCCATTTAATCGCCTGTTTCTGGCTCTTCTGTAGTGTTGGCGTTGACGCAGCAGCCACAGAGCCCCAGATCTGTTACATCTTGGACGGGATCCTGTTTGTCTACGGGATCGTGCTCACCGTGCTGTACTGCAGGCTCAAGCTGGTTCCTGGAACCTCCGCCAAAAAGGCAGCTGCCTATTCCGAGAAACAAGGGGAAGGCATTTATACGGGATTAACCCCTCGGGCTCAGGACACATACGAGACCATCTCCCCACAGAAGAAGGCGGGCAATTAGAGAACCGGATTAGGTTCTCGACTATCGATCAACCCCGCTCTCAGCGGGAACGAGCCACTTCTACAACGCAGACAATTTGTAGAACTGATTCTGTCCAGAAAACGATGTACATAACTTCAGAATTACTTTCCTGGGAGGGATTCAATAAGGTTTTAAGCACACTTAATTCATGAGTTTtgtaaattcaattcaataatcCTCATCTCTTAGGTTTTTATgatgtatacacacataatcAAAATCCCATTGTCttctatatttataatttatttaaactacacacacacatatatgtaatttgaaaaagcTTTTATCAGAAAGTTCTCGAAAGTAACTACAACTGTATTTGACTACAACCAAAATATTGCTTCAGTTAAGAGGACCCAGAAAAACAGACCTCCCCCCCTCTGCTTTTGAGTAAAACAGTTTGACCCTTTTAGATTTAGTTGCACTGTTCTTTGCAGACGCCCAGTTATGTATAAAGACATGTAGGTCTATGTTTTCTATGTGTATGTCTTATTATTGTcttcatttgtattaattgaatcAATCAGTGCAGCACTGGCCATTTTCTTTGTGAATAATCAGTAAAGCACATGTGTTAATAAGCTTTTACTACCTTAGAGCTCACACCTAATATTTAATGGCTTTTTTAGGGTATCACTTGATTGTGATTGTCTGCATCCTGGGTTACCTCACAACAGTGTAACCAAGATGTCTACTGtaaaactttacaaaataaaattatgacttGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168438 lncRNA downstream 196452 9414316 ~ 9416458 (-) True G134226
TU168298 lncRNA downstream 421618 9154436 ~ 9191292 (-) True G134143
TU168210 lncRNA downstream 809924 8802407 ~ 8802986 (-) True G134069
TU168111 lncRNA downstream 1129253 8430988 ~ 8483657 (-) True G133997
TU168002 lncRNA downstream 1424217 8188289 ~ 8188693 (-) True G133915
TU168546 lncRNA upstream 30755 9656356 ~ 9656645 (-) True G134298
TU168676 lncRNA upstream 166709 9792310 ~ 9799446 (-) True G134396
TU168678 lncRNA upstream 184197 9809798 ~ 10182061 (-) False G134397
TU168689 lncRNA upstream 227300 9852901 ~ 10344049 (-) False G134402
TU168692 lncRNA upstream 227300 9852901 ~ 9867138 (-) False G134402
AMCG00012065 mRNA downstream 16418 9579556 ~ 9596492 (-) True AMCG00012065
AMCG00012062 mRNA downstream 34853 9569628 ~ 9578057 (-) True AMCG00012062
AMCG00012064 mRNA downstream 52283 9557497 ~ 9560627 (-) True AMCG00012064
AMCG00012066 mRNA downstream 55956 9555193 ~ 9556954 (-) True AMCG00012066
AMCG00012068 mRNA downstream 59303 9552561 ~ 9553607 (-) True AMCG00012068
AMCG00012060 mRNA upstream 1553 9627154 ~ 9634149 (-) True AMCG00012060
AMCG00012061 mRNA upstream 19993 9645594 ~ 9650019 (-) True AMCG00012061
AMCG00012063 mRNA upstream 25656 9651257 ~ 9656027 (-) True AMCG00012063
AMCG00012059 mRNA upstream 57072 9682673 ~ 9688681 (-) True AMCG00012059
AMCG00012071 mRNA upstream 122668 9748269 ~ 9748552 (-) True AMCG00012071
TU168464 other downstream 74018 9535268 ~ 9538892 (-) True G134244
TU168269 other downstream 467615 9140824 ~ 9145295 (-) True G134119
TU168169 other downstream 911269 8699411 ~ 8701641 (-) True G134036
TU168124 other downstream 1047646 8489200 ~ 8565264 (-) True G134005
TU167732 other downstream 2056202 7545355 ~ 7556708 (-) True G133715
TU168674 other upstream 165240 9790841 ~ 9791348 (-) True G134395
TU168683 other upstream 221940 9847541 ~ 9848106 (-) True G134400
TU168706 other upstream 330250 9955851 ~ 9956360 (-) True G134411
TU168694 other upstream 332644 9958245 ~ 9958873 (-) True G134403
TU168679 other upstream 524880 10150481 ~ 10244924 (-) False G134397

Expression Profile