RNA id: AMCG00012067


Basic Information

Item Value
RNA id AMCG00012067
length 1782
RNA type mRNA
GC content 0.57
exon number 10
gene id AMCG00012067
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9635496 ~ 9643331 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCTGAGCGTCGCTGTGCTGTTCAGTTCAAGCACATTCTCCCCAAAAGAAGAATCCGAATGCCGGCGTCTGACGTCACTTCCGCATGTGCCAGCGCACACGCCCCCCTCGTCTGAGCAGCAGGAGCGGACAGCGGCGTCCTCTCGCAAAATGGGCCGCATCTGCTGCGTCCGCGGCTGCCCCAGACCCGCCGGCGTGTCTCTGTTCAGCTTCCCCACGAACGAGGCGATCAGGACGCGCTGGAGGGATTTCGTGCGGGTCCTGAACCCCGACTTCCAGGAGAAGCTGTCCTCGGTTATTTGCGGCAGTCATTTCCAAAGTGAGGACTTTGAGCACGGCAGCTGTCTGCTGGTAAAATGGGGCTTCAGCAAGTTCATACGGAAGCGCCTGAAATGGTACGCGGTGCCTTCTATACAGCCCGAGATTTCGACACTACCAGAGGAATGGCCCAACAAGAAAAGGAAACGACAGCCTTCATTCCATGACTACTGTTTACCGGGGAGCATTCACTGGCAGTTCTGCGAGGCCGTGAGCGAGCCCAGGGAGGGGGAGCCAGAGGACGGAGAGCAAGGGCCAGGCGAGCAAAGCGAGAGATCGGACAACCAGACGCCCAGAACAGCGTGCGGACAGACGCCCAAGCAGGACTGCGTCCAGACGCCCTACTGGACGTTCACCACCGAGAAGCACATCCAGACCGACCCCAAGCAGAAGGGGAAGGGGGGGCAGCAAGAGGAGGCGGCGGAGGATAGCAAGAGACTCACGGCAGAGCCTCGCATCGCCACGCCTCCCCCAAATCGCACCCCCCATCAGAGAAAGGCCTTGTGCAAAACGGTGTCCATTCTAGAGGAGCTCGGAAGCAAGGGGGTTCTATTCCTCTCGGTGGACTACAACAACAAGCTGTCGTCTCTGGGGACTGAAAACTGCCTGGATGGGCTGAACGACCACCAGATCGAGCTGCAGTACTGCTTCCTGTCCAGCTGCATGAGAAATGAGGGCCAGTTGAAAAATGACCCctgtgagaaagaaagaagagaagtGGAATACATCTTCAGCAGAAAATACAGAGaagcaagcggcacagtggacCGCTCCTATTACAAGCCCCTGAGCGAGGGGCGGCTGTGGGCCGCGGGGATGCCACGGGGGATGCAGCTGAAGATTCCCGTCCACTACGACAAGCCTGATTTGGAGGCCATCATCAGGCAGCAGGATCGGATTTACTTTGTATTGCCAGAAAACGGAGGAGAACTGCTCAATGCAAACACCGAATCCCCCGTCAAAATGGACATGCGGGACATGACTGATTGTTCCAGCGATGAGGAGCACTCCAGCAACGAACAGAGCTCGGACATAGACGACGCTAGTGAGAACAGCATGGCGGGGCCCTCTGGAGTGGAGGTGCCACTGTGCAGAGTAAAAGAGGAGGAAGAATCAAGTTACACAGTCATGTGGGAAAATGCAGGACACCGAAGCTTCCCCGATCGTTACGACACTGAAACCACGCAAAGTAACACGAGGTCTATGCACCGAAGCGTCGTGCCGCTCGCCGCTCCAAAGAGGGGTCCCGTGGAAACGACGTTCCCGAAACATTGCCTGGTAAAAGAGGAAGAGACCAAGCAAGGTGCGCCCGAAGgAGTCTGTAAGGTGGAGATTAAGGAAGAGGAGCAGGAGTGGGAGAGACAGTACAGTGTAAAGCTTCGCTGGGGACAGTCCATGGACAATTCtgaggacccccccccccacttaaaCCACCATTCCTCTCTGAGCCAAGGGTCTTAA

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168499 lncRNA upstream 63778 9567280 ~ 9571718 (+) True G134259
TU168454 lncRNA upstream 96522 9534314 ~ 9538974 (+) True G134236
TU168453 lncRNA upstream 96632 9534345 ~ 9538864 (+) False G134236
TU168426 lncRNA upstream 220579 9401454 ~ 9414917 (+) True G134222
TU168335 lncRNA upstream 325565 9280885 ~ 9309931 (+) False AMCG00012043
TU168528 lncRNA downstream 2695 9646026 ~ 9646444 (+) True G134284
TU168540 lncRNA downstream 10521 9653852 ~ 9654600 (+) True G134292
TU168553 lncRNA downstream 33447 9676778 ~ 9679102 (+) True G134305
TU168577 lncRNA downstream 126326 9769657 ~ 9770685 (+) True G134326
TU168586 lncRNA downstream 204191 9847522 ~ 9923017 (+) True G134335
AMCG00012056 mRNA upstream 90511 9542014 ~ 9544985 (+) True AMCG00012056
AMCG00012055 mRNA upstream 101255 9508741 ~ 9534241 (+) True AMCG00012055
AMCG00012052 mRNA upstream 194869 9438327 ~ 9440627 (+) True AMCG00012052
AMCG00012049 mRNA upstream 316860 9311422 ~ 9318636 (+) True AMCG00012049
AMCG00012048 mRNA upstream 327689 9305545 ~ 9307807 (+) True AMCG00012048
AMCG00012057 mRNA downstream 16418 9659749 ~ 9673361 (+) True AMCG00012057
AMCG00012069 mRNA downstream 68891 9712222 ~ 9719197 (+) True AMCG00012069
AMCG00012075 mRNA downstream 336559 9979890 ~ 9999729 (+) True AMCG00012075
AMCG00012076 mRNA downstream 356407 9999738 ~ 10004091 (+) True AMCG00012076
AMCG00012074 mRNA downstream 371513 10014844 ~ 10016191 (+) True AMCG00012074
TU168082 other upstream 1072282 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 1116470 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 1248399 8383113 ~ 8387097 (+) False AMCG00012006
TU167873 other upstream 1580475 8052124 ~ 8055021 (+) True G133822
TU167865 other upstream 1602887 8028063 ~ 8032609 (+) False AMCG00011993
TU168537 other downstream 8018 9651349 ~ 9653234 (+) True G134291
TU168543 other downstream 13026 9656357 ~ 9656727 (+) True G134295
TU168605 other downstream 209559 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 292595 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 390855 10034186 ~ 10034693 (+) True G134357

Expression Profile