RNA id: AMCG00012069


Basic Information

Item Value
RNA id AMCG00012069
length 2113
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00012069
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9712222 ~ 9719197 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGATCCATTCAAGTTTTCATTGCGCGCAGCACAGACTGAGGACTGACACTACTGAGGACACGATTTTTCTGGGAAACCGAAGAAGAATACTGTTGATCATTGTTATTAACcatctgttatttatatttgcgACGTTCATTTAAATCGCTTTCTTTACGGCGACTGAAAACGCTTGAGCACGGGTCGtttgcttccttttttttttaatttttttttttttgacgtacattttttccctcttcactACAGTACAGGATGTTTCCCGAATCGACTAAAGCCGGATACACCTTTGAAGACTACAAGCTGACCGCAGACTGGCTGCTGTCTCAGACCGAGCACCGGCCTCTGATTGCTATTGTCTGTGGGTCCGGCCTGGGCGGGCTGGCGGACATGCTGAAGGACCAGACTGTGATCAAGTACTCGGACATTCCCAACTTCCCCCAGAGCACAGTTCATGGACACGCTGGACGTCTCATTTTCGGGAACCTGAATGGCAAGCCGTGCGTTTGCATGCAGGGCAGGTTCCACTTGTATGAAGGGTATCCCATCTGGAAGGTGACTTTCCCCATCCGGATCTTCAAGCTCCTGGGGGTGCAGACCGTGATCATGACCAATGCCGCGGGGGGGCTCAACCAGGATTACAAAGTGGGTGACATCATGCTGATGAAAGACCACATCAACATGCCTGGCTTTGCTGGAAACAACCCCCTGGTGGGACCCAATGAAGAACAGTTCGGTGCCCGTTTCCCCTGCATGTCAGATGCCTACGATCGGGATCTGCTAAAATTGGCTCGGAAGATGGGCGCTGAGCTGGGGTACTCTGACTTCCTGAGGGAAGGGGTGTACTGCGTGCTGGGGGGCCCGTCCTTCGAGACCATCGCCGAGTGTCGCATGTTGAACCGTCTGGGTGCTGATGCTGTTGGCATGAGCACGGTCCACGAGGTGATCGTCGCTCGCCACTGCGGCATGCGGGTCTTTGGCTTGTCCCTCATCACCAACCTGGCCGTGATGGACTACGAAAGCGAACAGCGAGCCAACCACGAGGAGGTTCTGGAGACGGGCAAGCTGAGGGCCGGCCAGCTGGAGAAGTTGGTGACCAGTTTCGTGAGCCGCATCGAGCACAACAACAACTTCTGAGGTGCCGGAATTGGGGCCTAGGCGACCCTCTGTACTTCTGCTCCCCTGCGTCTGTGCTGCCCCTCAACTCTGCAGAAGTATTTGGGTTTTCTTTTATGCCTTCAGTCGACCAGAGCCTTTGCTGGTGAACTCATGATGGTGCAGAATTGAATTACCATTTCTAAGACCCCCacttgcttctctctctctctctcaacctgTAGATCTATCCCCCAACCcaaatccaccccccccccaaattataaatacaagcCTGAGGGTAGGGGAAACAAACCCAAAAGGCAGCTAgttaactttattttgttttctgagtaTTTGTGTACATTCCTTAGGAAACTGTGGGGGGACAACACTGAAAGAACATTGTGTAAATCTTTCAATGTTTGTAGTGTACAGTTCTGTttggaaatgaaatgaaactgcAGTAGAGCTTGCTGGATTGCACACAAACCTCTAAAATGGGCTGAAACAGTCCCCTGTTGTCAAACACCTTTTTAGATGGAGGAATTGCAACCAGAACTGTTACACAACTGATGAGAAATGAAGGCCCGTGGTTTAATTGTAATATAGGCATCATTCTCATTATGTGAGCACCTTATGGCATAAAAGCGGATCTAGAAGCATTTAaagtgtataaaatgtatttaacaattGCAGATTTTGATGGTTTTGATGTTTTGAGGTAAGTGACGCAGTACCAACTATATCCTATGAGTCAATTTGtatctcaaaatgtaaaaactccACAACCAATGGAATGTAGATTTTAAAGCAGCATCCAGACACTTTATGACAAAATGAGACGTCACACCCAATATATTTGTAGAAGTGTCATCCAGCTGAGATCTATGTGGTTTCATTTGTATCTGCTACTTGTAcgtctaaattattatttgctaAATTTAGAAAAACGTATCTATTTAtctggcatatatatatacggtacattttaatgtgttatagGTAAtgttgag

Function

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG:

id description
K03783 punA, PNP; purine-nucleoside phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168553 lncRNA upstream 33120 9676778 ~ 9679102 (+) True G134305
TU168540 lncRNA upstream 57622 9653852 ~ 9654600 (+) True G134292
TU168528 lncRNA upstream 65778 9646026 ~ 9646444 (+) True G134284
TU168499 lncRNA upstream 140504 9567280 ~ 9571718 (+) True G134259
TU168454 lncRNA upstream 173248 9534314 ~ 9538974 (+) True G134236
TU168577 lncRNA downstream 50460 9769657 ~ 9770685 (+) True G134326
TU168586 lncRNA downstream 128325 9847522 ~ 9923017 (+) True G134335
TU168614 lncRNA downstream 167661 9886858 ~ 9945740 (+) True G134346
TU168615 lncRNA downstream 167661 9886858 ~ 10428524 (+) False G134346
TU168608 lncRNA downstream 208715 9927912 ~ 9946489 (+) True G134341
AMCG00012057 mRNA upstream 38861 9659749 ~ 9673361 (+) True AMCG00012057
AMCG00012067 mRNA upstream 68891 9635496 ~ 9643331 (+) True AMCG00012067
AMCG00012056 mRNA upstream 167237 9542014 ~ 9544985 (+) True AMCG00012056
AMCG00012055 mRNA upstream 177981 9508741 ~ 9534241 (+) True AMCG00012055
AMCG00012052 mRNA upstream 271595 9438327 ~ 9440627 (+) True AMCG00012052
AMCG00012075 mRNA downstream 260693 9979890 ~ 9999729 (+) True AMCG00012075
AMCG00012076 mRNA downstream 280541 9999738 ~ 10004091 (+) True AMCG00012076
AMCG00012074 mRNA downstream 295647 10014844 ~ 10016191 (+) True AMCG00012074
AMCG00012079 mRNA downstream 348359 10067556 ~ 10074742 (+) True AMCG00012079
AMCG00012078 mRNA downstream 378951 10098148 ~ 10100456 (+) True AMCG00012078
TU168543 other upstream 55495 9656357 ~ 9656727 (+) True G134295
TU168537 other upstream 58988 9651349 ~ 9653234 (+) True G134291
TU168082 other upstream 1149008 8561042 ~ 8563214 (+) True G133974
TU168076 other upstream 1193196 8518014 ~ 8519026 (+) False AMCG00012008
TU168052 other upstream 1325125 8383113 ~ 8387097 (+) False AMCG00012006
TU168605 other downstream 133693 9852890 ~ 9867143 (+) True G134338
TU168607 other downstream 216729 9935926 ~ 9936411 (+) True G134340
TU168629 other downstream 314989 10034186 ~ 10034693 (+) True G134357
TU168638 other downstream 414830 10134027 ~ 10134592 (+) True G134365
TU168639 other downstream 420757 10139954 ~ 10140457 (+) True G134366

Expression Profile