RNA id: AMCG00012085


Basic Information

Item Value
RNA id AMCG00012085
length 2725
RNA type mRNA
GC content 0.42
exon number 9
gene id AMCG00012085
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10367089 ~ 10436690 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGACCGCCAAGAATCCACCAGAACTGATTTGCAATGAAAAAGTGTCACATCTGCAACAGAACTACTCTGCTTTAGAAAAGATCATTGATGagACTACAGTCACCCAGCCCACAGTAACTGTCAGAAGATCAGCACAGGACCAGCCGGGACCAGACAGTGCAGTGCTGGAATGTGTCATTACTGGCTTCTCCCCTCGCGACATCTATGTCAAGTGGCAGGAGGGATCCAATGACCTTTCCGAGAACCAGTATGACAATCATCCTGCAATAAAAGACACTGGGAAGAACACTTTTTCAATGGTCAGCAGAGTCACTGTTAAAAGCAATGCATGGAAGAAAGTGAAAACCTACACATGTGTGGTGATCCAAGACAATCTAATGACTGCAGCTTTAAATGCATCCAACGGCCTCTTTGACGTACCCACTGTCACCATCCTGCTGAGCCCAATTAATGACAAGTCAGTGCAAAGCAATCCAAGACTTGTTTGCTTGACATCTGGGTTTAGTCCAACAATCCAGTGGTTGGGGGCTAATCAGAAATCCCTTAAGAGCACTAAGGAGACAATTGCCATGGGCGACAATGGACGCTTCATAGTGGAAATACTTCAAAACTCAACGTTGACGGCAGAGGTTTACCTCATTGGGCCTTCAATTCGTGATCGCTCCCAATCCACAGAACTGAACGCTACATGTCTGGTGATTGGCCACAACCTAAAAGACTTCCACATTAGCTGGACAGTTGATGGATTAAACCGTACAacccaaatgaaaacaaatgaccCCACTCGCCATGCCAACCAGACAGAGACAAGGATTAGCACTCTGAGCTTGACTAAAGATGAATGGAATGGACACAAGAATGTCTCCTGTGCAGTGGTACATATTTGTTCCAGCGAGCCACAGATGGTCGAAATCATTAAAGCAAAAGATCCCAAACGTCCCACCATTCAGATCTTGGAGACTCACTATTCCGACCTGTCCAAATCGAACGAGTCCACTCTCGCATGTCTGATTTCTGGATTCTACCCGGCTGATATTTCCGTGCAGTGGAAAATGAATGGCAGTGAAATCCGGTCACAGGAGTACACAATACAGAGCGGTGCTGTCACTCAAGAGAAGGACGTCAAGACTTACACCATGGATAGCAAACTAAGAGTGCCAAAATCTAAGTGGCAGTATGGGGCTTATGCTTGCACTGTCCACCACGAGTCTTCAGAGGAGCCCATTGAGCAGACCATAACTGATGTTTTTGGCTCAGTGATTCCATCTCCACCCAAGGCACACATTTTGCGGGCTACTAATCAGCTTGTGTGCTTGGTGTCTGACTTCAGCCCTAAAGCCATCAACATCACGTGGCTTTCAGACAAGAGTCCCGCGCCACACGCCTATACAATGACCGGACTGGCGAGAGGTAGCAATGGGAAGTTCTCCACGCAAAGTACCCTTCATATTTCAGACACAGACTGGACCCCGGGAATGGTTTTCACATGTAAAGTGGTCCATGAGGCCGCCAACATTCCCCTGTTAGTCAATATAAGCAAACCAGTAATTATCAACGAGAAGGATTATTTTGATGAGGACGTGAACGGCTTCAGCCCTGAAGATGACCTTGGACAAATCTGGAGCACCGCGTGCACTTTCATTTTCCTCTTCCTGATATCCTTTGTGTACAGCAGTATCGCTACCATAGTTAAGGTCAAAAGATTTTGAATGTAAGGAGATGCACATGTGAAGCAACGTATGCCCTGTGAAAACCTCCACCATCACCAACAGAGAGACAGAATCTGAGGTCTTTTAGTGAAAACAATGCTTCCAGTGACCTTGAGGCACCAACATGTTCAATATTGATTCTGGGTTGCAATGAAGTAGCTTTCAGATAATTGCGCTCTGAACTACACAGTTTTGCCCTGAGACTCTGACAACAGTTACCAGCACCATTCTGCTTTTCTTGAACCCTTCCTTGTGCATTGCAGATGATCAGTTTatttgcaattatgtttttaaagttacatatattgatgtttttattttattttattgtatgtcaTTTTGATTGAGTGAGAAACAACAAGTAAAGAAAAATCCATGCCTTGGGAATGTTGGGTCTCCTAACACTGACATATTGTAATGCATTAAGTAACCACTAGAGGACAGTAGATATGGAAGAACATAGGATGTGTTGAAGAAGGGTAGGGTGTGCATTGGAAGTGTGAAGTGAGCTACAGTTATGTAGTTGCAGGTGATAAACAATCActgaaacaatacatatattgcaGAGTACTTCAAGCATGCATTGGTCATTggtctgtatgttttattatgttttgcttCCTCTCTATGGCAAGTTTTGGTGAGGAAATATGAATACTTTAAGATGGATGGGAGCTGTTTATCTGATGGTGGTGTAAAAGAATATGCAGGAGGCAAGAGTGTGAGCATGTGACATATCGATTTGTTTCAAGTGTTGTATCTATGTTATAGAAACCCATGTTCTTCCATTTTTCTTGTTAAAAGAATATTCATATAAAACTATGCATTAATTTCATTCTCAATTTTAGTTTGACAATTTTTGGCTTAATCATTCCTACTGTATATGACTGAAAGGGTTATGTTAATTATACGTCTATTAAcctatataaacacattgataTTGTTATAATTCAAATGGTATCGGGGTGCTAATTCAtactaatttgtttttcctttatctaaataataaaat

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168688 lncRNA downstream 19364 10345062 ~ 10347725 (-) True G134402
TU168690 lncRNA downstream 20900 9927912 ~ 10346189 (-) False G134402
TU168689 lncRNA downstream 23040 9852901 ~ 10344049 (-) False G134402
TU168754 lncRNA downstream 61062 10303569 ~ 10306027 (-) True G134451
TU168743 lncRNA downstream 79960 10225627 ~ 10287129 (-) True G134443
TU169026 lncRNA upstream 530586 10967276 ~ 10971088 (-) False G134648
TU169027 lncRNA upstream 530586 10967276 ~ 10982791 (-) True G134648
TU169223 lncRNA upstream 893776 11330466 ~ 11347810 (-) False G134803
TU169245 lncRNA upstream 959270 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 1059985 11496675 ~ 11769509 (-) True G134817
AMCG00012081 mRNA downstream 160327 10205472 ~ 10206762 (-) True AMCG00012081
AMCG00012080 mRNA downstream 274152 10080716 ~ 10092937 (-) True AMCG00012080
AMCG00012077 mRNA downstream 305620 10044620 ~ 10061469 (-) True AMCG00012077
AMCG00012073 mRNA downstream 391838 9970993 ~ 9975251 (-) True AMCG00012073
AMCG00012072 mRNA downstream 476343 9886410 ~ 9890746 (-) True AMCG00012072
AMCG00012093 mRNA upstream 129520 10566210 ~ 10582453 (-) True AMCG00012093
AMCG00012090 mRNA upstream 150892 10587582 ~ 10591854 (-) True AMCG00012090
AMCG00012091 mRNA upstream 156192 10592882 ~ 10596371 (-) True AMCG00012091
AMCG00012092 mRNA upstream 197900 10634590 ~ 10650309 (-) True AMCG00012092
AMCG00012094 mRNA upstream 246678 10683368 ~ 10704672 (-) True AMCG00012094
TU168748 other downstream 111051 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 115974 10250271 ~ 10251115 (-) True G134445
TU168679 other downstream 122165 10150481 ~ 10244924 (-) False G134397
TU168677 other downstream 122165 10244421 ~ 10244924 (-) True G134397
TU168739 other downstream 136646 10212142 ~ 10230443 (-) True G134441
TU168910 other upstream 293085 10729775 ~ 10811881 (-) True G134581
TU169020 other upstream 498242 10934932 ~ 10961871 (-) False AMCG00012111
TU169224 other upstream 893776 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 1637314 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 1682590 12119280 ~ 12119632 (-) False AMCG00012170

Expression Profile