RNA id: AMCG00012087



Basic Information


Item Value
RNA id AMCG00012087
length 939
RNA type mRNA
GC content 0.57
exon number 5
gene id AMCG00012087
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10543413 ~ 10545945 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGTGTGGTTGCGGCAATGAACCCGTCGGAGCGGCTGCCAGTCCTTACTGGATGAGAGGGATGGTGTTCCCAGAGTGGGCGTACAAGCCCGACTGGACCCCCGGCTCCCGGCAGATCCAGCTCTGGCACTTCATCCTGGAGCTGCTGGCGAGGGACGATCTGAGCGCCGTGATTGGCTGGCAGGGGGACTGGGGGGAGTTCGTCATCCGGGACCCTGAGGAGGTGGCGCGGCTGTGGGGGGCACGCAAGGGCAAGCCGCACATGAACTACGACAAGCTAAGCCGGGCACTCAGGTACTACTATAACAAGCGCATTCTCCACAAAACAAAGGGCAAGCGTTTCACGTACAAGTTCAACTTCACGAAACTGATCCTGGTCAACTACCCGGGCTGGGACGTCAACTCCATGTCTAGGATGTCAGaaaaaaaaacagcatcaacaacaaaaatcctcATCTTCATCATTGCCATCCTCTTTCAGTTTCTACAGAACCTGTTGTTAACCCAGAGGGCCCTGGCGAGCCAGATCACCACTCAGAGAGCAGAGTATCCCAGAGAAATGGCCTACAGCATGGATGGACCGATGAAGAAATCGGCGGTAGACAGAGgTCGTCACTCCATTCACCAGCCCTTCTATCTGCACCCTTGCTGCATACCGACAACCCTTCCCTTTCCGCACACCTCTCCCCTGAGTGGGCGGCTCCCTTACCTGTCAGTCCCACCTCCTCCCAGAGTGAGCCAATCAGACATCCCCTGTGTGCCACCAATCAACCACAGCCTGCACTTTCGCCCTCCCCTCCCGGGCACTCCCATCCAATGGCAGATCAACAGGGGTGGCAGGGGGCgggaggaggtggaggtgggCAGTGGGACTCTGATGAAGAAGGATTGCGAAAAGAAGGGGAAGCTGGAGTGGAAGCTTGGGTTCTCTGCGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU168615 lncRNA upstream 114889 9886858 ~ 10428524 (+) False G134346
TU168654 lncRNA upstream 273359 10269680 ~ 10270054 (+) True G134378
TU168643 lncRNA upstream 298684 10194394 ~ 10244729 (+) True G134369
TU168606 lncRNA upstream 342443 10199151 ~ 10200970 (+) True G134339
TU168619 lncRNA upstream 362706 9958351 ~ 10180707 (+) False G134350
TU168804 lncRNA downstream 48904 10594849 ~ 10595406 (+) True G134495
TU168807 lncRNA downstream 52594 10598539 ~ 10598841 (+) True G134498
TU168833 lncRNA downstream 87563 10633508 ~ 10684097 (+) True AMCG00012088
TU168877 lncRNA downstream 303913 10849858 ~ 10853291 (+) True G134556
TU168958 lncRNA downstream 387770 10933715 ~ 10935107 (+) False G134613
AMCG00012084 mRNA upstream 150815 10363956 ~ 10392598 (+) True AMCG00012084
AMCG00012083 mRNA upstream 189670 10338828 ~ 10353743 (+) True AMCG00012083
AMCG00012082 mRNA upstream 262881 10265100 ~ 10280532 (+) True AMCG00012082
AMCG00012078 mRNA upstream 442957 10098148 ~ 10100456 (+) True AMCG00012078
AMCG00012079 mRNA upstream 468671 10067556 ~ 10074742 (+) True AMCG00012079
AMCG00012086 mRNA downstream 5725 10551670 ~ 10564853 (+) True AMCG00012086
AMCG00012088 mRNA downstream 83739 10629684 ~ 10634699 (+) False AMCG00012088
AMCG00012089 mRNA downstream 113957 10659902 ~ 10668786 (+) True AMCG00012089
AMCG00012096 mRNA downstream 222099 10768044 ~ 10777082 (+) True AMCG00012096
AMCG00012097 mRNA downstream 247941 10793886 ~ 10796475 (+) True AMCG00012097
TU168610 other upstream 225595 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 235574 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 284189 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 402956 10139954 ~ 10140457 (+) True G134366
TU168638 other upstream 408821 10134027 ~ 10134592 (+) True G134365
TU168966 other downstream 380661 10926606 ~ 10930453 (+) True G134613
TU169090 other downstream 696284 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 700737 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 738805 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 890434 11436379 ~ 11446163 (+) True G134743

Expression Profile