RNA id: TU168833


Basic Information

Item Value
RNA id TU168833
length 3647
lncRNA type read_through
GC content 0.37
exon number 2
gene id AMCG00012088
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10629684 ~ 10684097 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aagggtttctttttttattattttacaacaatGGAAAGAACAACAGAAAAGGTTAGCAGTGTTCcaagaaggaaaatgaaaaatacaatgcgGGTTAATGATTTACTTGTTTTAACAATCAACACCTCAGTTATTTTGCTTgtgaacacaaataaaataataataatcatcctcataataatcataataaaaaaaaactttttcaaGACATTGAATCTTTATGTATTATCTTAAGACTGCGATATCCTTAAGGCTTCCTTGCAGGTGGTGATATCAATGtccttagaaaacaaaaacaataatacttgATAACTGACAAACTATTaaaagccaagaaaaaaaatctttcttcaTTGCCTTCTTGTTACTATCTGTGTGGAGGAGTAGTTCACATATTCCCAGAACAACACTTAATCAACATGGAGGTGACCTGTGCCTTGTGTAGAACCTGAGATCTCCGTAGTTCCACAAAGAAGAACCAAGAGAAGAATTCACCAAGGTGTTTATGTGTGTACACTATCTTCTTTCATGGGCTGTTTCTTTTACAAGAGTAGCAGAACTATtattgtaatggaaaaaaaaaaaacagtttggaaaaaataaatcctctgGTGGTAAAAATGGACTTTGGCTTTCTGAAAGGATCATTTTTTCgtaaacttttttcttttgttcttttggaCAGCCTTTACAGGATATATGCacgttattaataatattaaaattgttaaaGAACGTGGATAAACGCTGCAACCAGGGATCAGAGATGCAAGCATATGCTTCTCCAGAGTTCTCTCAAGCAATAAAGATGTGGTTACTACCCAACACAGGCAGTGGTGTCAGTTATCAAGTCCTCTAGatttgaaaccaaaaaaatatacattaaaaacatattatccACTACAACAAAGCCTCCTGGATACCTTATTCTAgttgaaaaaaaggaaatacagaaatgacatttctgctttcttttttgtatttatatatatataaaacataaaacattggcctttcattaattatgtttataacATGCATTTCTACTTACACATCCGGCAGAGAGCTAGCAAAATTAGGGTTTCAACAtgtttattgtgctttttgggggttgtattttttttttttacatggacTTTAGAAAGACACAGCTCTTTACATTACTTTCCTGTTTTCCCCTCCAGTCCAATGACCCGCCAGAAATATATGGCAGTGGTAAGAAGGAAGATATATATGTCTATGCAACTGGTGTTTAAGTTGAGGGAGGTATGGTACTACTGAGATAGTGTCTGTGCAGGGCACGGTCGGATTGGAATAGATTGAAAGGGGGATGGAAATTTGCATTGAGACTGAGCACCTGTGAAAGAGATAAGGAATGGGGACTGTTGAGGGGCCAGATAAGAGAGTTAATCTGACACCTTAACTTGAAAAGCTCCAATTGCAGGAACGCCAGTGATATCGCTCACAAACCtataataaacagaataacCTAGATGTGCGGCTATGGGACTCAGTTTCTTATAGATTTTGAATCAAATATACATGAATCACTGGCGTCTTGTttcagtttaaagtttaaagtaaaCACCAAGGTCTTTGTGGTTTCGGttgtttgctgctgttttacACTTCGCTTTCCAGCGTGACTTCATTTGCTTTTCAGTCACTTTTACCAAACAAGTAGTAAACAACTCAAGTCAAGGAACAGGTCCTAGAACAAATgtcatgctttaaaatgaatactcTAAATACGTTTTAGCTTtccatatatacattaatattttggACTCTCCTTAACCCCATGCCTTATAGACATTTTCTGAAGAGCATGCAAAACATTTCTCCAGAGGTTTCTGTTTGGCATTCTCTTGTTGCATCGATTACATTGTTCCCAGAAGAAGATACTTTCCAAACTCACCCAAACCAGTGTGGTCCTAGCAAAACGGGAGCAGCTGAAGTGGGACTAAAAGGGGTTACATATCTGATCTAAGAAATATGCTCAATGCATTGTAGTCAACAAGCCAAGCCTGAGAAAGACTGTACAGCAGATTAAGGAATTCATTACAGCACTGTTTTTGAATGTCTTCTGTTGATGTTTGTGGTTGACCACTTCCAGGTAACAGACCCAAACAAATTCAGAGGTGATCTCACAGTCTGTGGAAAAGCTATTGCACCAGTTGTTCTTTTGGGCAGCTTTAACAGAATATACCTTATTAGTAATATTGTTAAAGAGCATGGATAGACCCTCCCATCCAAATGTCCTCAACTGTACAAGACATTTCCTTCTTTAAGTGTGACTGACCTTCCTGACAGGTTACAAAGCAAGGATACAGTGGAATGCAGGGAAATGAAAGTTTCTGCATGATCTCAAGCTTGGCTACTGCTGGTCCAGTTTGCCTGGCCTTCTCTTTTTAAAGTAGTTCACTAGCAAACAGTGCAGGGGGACTTCAGAGGGAGGTCATGCTAAGGCAAGTGGGGATTGAGGGAGTTCTAGCACCAGTTAAATCTACAGATCTCTGAAGGGCTAAGGACCATTTCAGGTCCATTTCAGTCCCACGTGGATGTGAAGCTGTGAGGACCTCCTTTCCTGAACAACACATTCAGAGATATGAAAAAAAAGCCCTCAGAATGTACAATCCATGCAAACTGCAGTAATTACTGTCACTTTTAACCTTTAGCATTATTCACAGCACCAGTGATGACATAATCTTCAATTATCTGTTATTACACTGTTATTACACTTTGTCAGATCTACAGCCGATATGCATTCTGAGAGAGATTCCTCCCCTTCACCACCTACATCATACTTCCATATGCTGCCTTATACTAACTAATCCTATTCTGAGTTAGTAGTCCACGTTAATATCTCTACTACAGGGTTTCTTTGGCCTGCTTTTACAGCTCTGGCTTGGAGGTTTCATCCGATCTTAGTAGAGACATTGATTACAAGGCATAGGCAAGCTGGTCATAAAACATCTAATTTGGGTGTCCCAGTTCTTTGATGGTAACTTATAGTAGATCCTACAGACATGGGTACACACCAAATGGAAATGAGAGTGGAAGTTGGGTCCCTTCAAAAAGAAAGTATCTTTCATTGATGGAAGAATGAGCAGATAAGAATGAGAGGGAAACAATAGGATTTTCTTTTGAGAAGCTTGTGTGGTTAACAGATAtgatcttaaaataattaattgctcCTGGGCTAGTATGTTAAGTGTCTAAAGTCTGGCTTAGCAGAGTGCACACTTTACAACTGATCTtcaatttacatgttttaaaatataactctGAGAATCTAACATAATGGATATCAACcagtattttatgtgttttaattttgtctttttcaattagaattgtcatttaaacatgttaatttgAGGAATTTATCAATCGAGTTTGTCCTGTGAATggaaaacaagtaaatacacCTTCAGGCAGGTCCCACGATCAAACTTTCATCATGAGAACTTATCGAATGTATTTGCctgtttagagaaaaaaaagtatgcaGGTGTATCCCCAAAATAGGTTCAATTACTGGTTTCATAGAAACAGGCGTCTGTTACAAGTGGTATAAATATTTGCTTAAAATATCTTGCCAGGgagagaggaggatcATTATCACTGCATGGGGAGAGAGGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168807 lncRNA upstream 34667 10598539 ~ 10598841 (+) True G134498
TU168804 lncRNA upstream 38102 10594849 ~ 10595406 (+) True G134495
TU168654 lncRNA upstream 363454 10269680 ~ 10270054 (+) True G134378
TU168643 lncRNA upstream 388779 10194394 ~ 10244729 (+) True G134369
TU168606 lncRNA upstream 432538 10199151 ~ 10200970 (+) True G134339
TU168877 lncRNA downstream 165761 10849858 ~ 10853291 (+) True G134556
TU168958 lncRNA downstream 249618 10933715 ~ 10935107 (+) False G134613
TU168978 lncRNA downstream 283179 10967276 ~ 10971088 (+) False G134615
TU168979 lncRNA downstream 283179 10967276 ~ 10982794 (+) True G134615
TU168992 lncRNA downstream 364968 11049065 ~ 11055684 (+) False AMCG00012112
AMCG00012086 mRNA upstream 68655 10551670 ~ 10564853 (+) True AMCG00012086
AMCG00012087 mRNA upstream 87563 10543413 ~ 10545945 (+) True AMCG00012087
AMCG00012084 mRNA upstream 240910 10363956 ~ 10392598 (+) True AMCG00012084
AMCG00012083 mRNA upstream 279765 10338828 ~ 10353743 (+) True AMCG00012083
AMCG00012082 mRNA upstream 352976 10265100 ~ 10280532 (+) True AMCG00012082
AMCG00012096 mRNA downstream 83947 10768044 ~ 10777082 (+) True AMCG00012096
AMCG00012097 mRNA downstream 109789 10793886 ~ 10796475 (+) True AMCG00012097
AMCG00012098 mRNA downstream 119271 10803368 ~ 10804229 (+) True AMCG00012098
AMCG00012099 mRNA downstream 128600 10812697 ~ 10816328 (+) True AMCG00012099
AMCG00012105 mRNA downstream 132491 10816588 ~ 10819586 (+) True AMCG00012105
TU168610 other upstream 315690 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 325669 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 374284 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 493051 10139954 ~ 10140457 (+) True G134366
TU168638 other upstream 498916 10134027 ~ 10134592 (+) True G134365
TU168966 other downstream 242509 10926606 ~ 10930453 (+) True G134613
TU169090 other downstream 558132 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 562585 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 600653 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 752282 11436379 ~ 11446163 (+) True G134743

Expression Profile