RNA id: AMCG00012103


Basic Information

Item Value
RNA id AMCG00012103
length 1263
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00012103
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10830517 ~ 10836605 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACAGCTCCCGTCGTGCACCGCGAAAGAGTGACGCCACTGCTTGGCGCCGTGCTTCAGACGTGTGTGGAAGGAGCTGAGTACGGCGCGCTGTTCCACTCATACACTATTGCTGTTTTTATAAAGCAACCATTTCCAAAATACATCAAATCTCTTCTAAAAACCGCGAACACCATGGGCCCTGTCGAGctCCTGCACATGTCAGTCTTCTCCCAGAGCTTCTCTCCCTGCGGGCGCTTCCTGGCCGCTGGGAACAACTATGGCGAGATCGCGATCTTCAGTCTGCTCTCCACTGATGGGCAGCTGCTGAGCGCCGGCAATGGAGAAATCACAGCCTGGAACTGGAGCGAGCTGATCAAAAAGGGCATTAAGGCTGTATGGACTCGTAGACCACAGTACAAGACGAGTCTAGAGATGCCAGAGATCAATGCCATGGTCATTAACCCCAGAgataaCTCTCTGTTGGTAGGAGGAGGTGACAACAATATTCACGTGATGGATTTAGAGTCAGGTGTTTTTAAGatGGTGCTGAAAGGTCACAGTGACTACATCCACTGTCTCAGTgtgcgagagagggagggggagacgCTGTCTGGCAGCGAGGACGGGGCTGTCCGAGTCTGGGACTCCAGGACCGGAAGCACGGTGCACTGCATAGAGGACTGTGCCAGGCCCCAGTACGGGAAGTGGATCAGCTGCCTGACGACTGACTCTGATTGGATGAGACAAACCAGCTTCTACCAGGACCTgATCCTGTCGGTAGGGGACAGCGCATTCCTGTCTCACTGTCAGCTCAGTGGAGAGGTGCGTGCGCGGATCCCCTGCTCCCCCCCCAGCCTGTACACTCTGGGGCTCAACACAGGCTCCACTGAACACAGGGTGTTGACAGTAGGGGGCAGCAGCGGACAGATAGACGTCTTCACCAACTTCAGCTACAGAGCCTTCTCACTGTCTTTTTGATACTGTATAAATACGCAACACTCACACTGATACACCGTatacacaacactgacacacacacacagccagcaatCAAACTGATGTACTGTATACAAACACACCCTGTTGttgtatatacacaaacagcCAACActtatacactgtatatatgttttatacatacaACCCACACACACGGATGCTCTgtgtacacacaacacacacacactgatacaccgTATACACAAACCCTTTTGcattgtatacacacacactggtacattgcagtgtgtctgttttttttgtaataaatattttgtaataca

Function

GO: NA

KEGG:

id description
K13175 THOC6; THO complex subunit 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168688 lncRNA downstream 482792 10345062 ~ 10347725 (-) True G134402
TU168754 lncRNA downstream 524490 10303569 ~ 10306027 (-) True G134451
TU168743 lncRNA downstream 543388 10225627 ~ 10287129 (-) True G134443
TU168695 lncRNA downstream 629292 10200802 ~ 10201225 (-) True G134404
TU168696 lncRNA downstream 884028 9936100 ~ 9946489 (-) True G134405
TU169026 lncRNA upstream 130671 10967276 ~ 10971088 (-) False G134648
TU169027 lncRNA upstream 130671 10967276 ~ 10982791 (-) True G134648
TU169223 lncRNA upstream 493861 11330466 ~ 11347810 (-) False G134803
TU169245 lncRNA upstream 559355 11395960 ~ 11400701 (-) True G134819
TU169240 lncRNA upstream 660070 11496675 ~ 11769509 (-) True G134817
AMCG00012100 mRNA downstream 3370 10818095 ~ 10827147 (-) True AMCG00012100
AMCG00012095 mRNA downstream 68065 10755045 ~ 10762452 (-) True AMCG00012095
AMCG00012094 mRNA downstream 125845 10683368 ~ 10704672 (-) True AMCG00012094
AMCG00012092 mRNA downstream 180208 10634590 ~ 10650309 (-) True AMCG00012092
AMCG00012091 mRNA downstream 234146 10592882 ~ 10596371 (-) True AMCG00012091
AMCG00012101 mRNA upstream 711 10837316 ~ 10848475 (-) True AMCG00012101
AMCG00012102 mRNA upstream 16004 10852609 ~ 10858416 (-) True AMCG00012102
AMCG00012104 mRNA upstream 38482 10875087 ~ 10879326 (-) True AMCG00012104
AMCG00012109 mRNA upstream 57743 10894348 ~ 10899593 (-) True AMCG00012109
AMCG00012111 mRNA upstream 120584 10957189 ~ 10961792 (-) True AMCG00012111
TU168910 other downstream 18636 10729775 ~ 10811881 (-) True G134581
TU168748 other downstream 574479 10255526 ~ 10256038 (-) True G134447
TU168746 other downstream 579402 10250271 ~ 10251115 (-) True G134445
TU168677 other downstream 585593 10244421 ~ 10244924 (-) True G134397
TU168739 other downstream 600074 10212142 ~ 10230443 (-) True G134441
TU169020 other upstream 98327 10934932 ~ 10961871 (-) False AMCG00012111
TU169224 other upstream 493861 11330466 ~ 11386979 (-) True G134803
TU169384 other upstream 1237399 12074004 ~ 12101973 (-) True AMCG00012171
TU169390 other upstream 1282675 12119280 ~ 12119632 (-) False AMCG00012170
TU169437 other upstream 1354950 12191555 ~ 12213799 (-) True AMCG00012174

Expression Profile